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Nucleic Acids Research|November 13, 2019
New developments on the Encyclopedia of DNA Elements (ENCODE) data portalYunhai Luo, Benjamin C Hitz, Idan Gabdank, et al.Nucleic Acids Research|November 11, 2017
The Encyclopedia of DNA elements (ENCODE): data portal updateCarrie A Davis, Benjamin C Hitz, Cricket A Sloan, et al.Database : the Journal of Biological Databases and Curation|March 17, 2016
Principles of metadata organization at the ENCODE data coordination centerEurie L Hong, Cricket A Sloan, Esther T Chan, et al.Plos One|April 14, 2017
SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadataBenjamin C Hitz, Laurence D Rowe, Nikhil R Podduturi, et al.Nature Communications|October 31, 2025
Data navigation on the ENCODE portalMeenakshi S Kagda, Bonita Lam, Casey Litton, et al.Nature Methods|March 20, 2024
Multicenter integrated analysis of noncoding CRISPRi screensDavid Yao, Josh Tycko, Jin Woo Oh, et al.Biorxiv : the Preprint Server for Biology|June 9, 2023
The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversityFairlie Reese, Brian Williams, Gabriela Balderrama-Gutierrez, et al.Research Square|July 28, 2023
The ENCODE Uniform Analysis PipelinesBenjamin C Hitz, Jin-Wook Lee, Otto Jolanki, et al.Biorxiv : the Preprint Server for Biology|April 17, 2023
The ENCODE Uniform Analysis PipelinesBenjamin C Hitz, Lee Jin-Wook, Otto Jolanki, et al.Biorxiv : the Preprint Server for Biology|February 23, 2026
A scalable approach to resolving variants of uncertain significanceMalvika Tejura, Yile Chen, Abbye E McEwen, et al.Pageof 9