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Systematic Biology|July 17, 2023
Espalier: Efficient Tree Reconciliation and Ancestral Recombination Graphs Reconstruction Using Maximum Agreement ForestsDavid A Rasmussen, Fangfang GuoPlos Computational Biology|August 19, 2022
Recombination-aware phylogeographic inference using the structured coalescent with ancestral recombinationFangfang Guo, Ignazio Carbone, David A RasmussenZhongguo Xiu Fu Chong Jian Wai Ke Za Zhi = Zhongguo Xiufu Chongjian Waike Zazhi = Chinese Journal of Reparative and Reconstructive Surgery|February 11, 2019
[Effectiveness of upper eyelid rotation flap via blepharoplasty incision for correction of mild to moderate epicanthus]Fangfang Guo, Guansen NingElife|September 16, 2015
The effects of a deleterious mutation load on patterns of influenza A/H3N2's antigenic evolution in humansKatia Koelle, David A RasmussenPhilosophical Transactions of the Royal Society of London. Series B, Biological Sciences|February 20, 2025
Phylodynamics beyond neutrality: the impact of incomplete purifying selection on viral phylogenies and inferenceKatia Koelle, David A RasmussenElife|August 15, 2019
Coupling adaptive molecular evolution to phylodynamics using fitness-dependent birth-death modelsDavid A Rasmussen, Tanja StadlerMolecular Biology and Evolution|June 25, 2024
Exploring the Accuracy and Limits of Algorithms for Localizing Recombination BreakpointsShi Cen, David A RasmussenJournal of the Royal Society, Interface|September 17, 2011
Rates of coalescence for common epidemiological models at equilibriumKatia Koelle, David A RasmussenPhytopathology|October 6, 2020
Phylogeographic Approaches to Characterize the Emergence of Plant PathogensDavid A Rasmussen, Niklaus J GrünwaldComputational and Structural Biotechnology Journal|November 25, 2024
Cell-to-cell distance that combines gene expression and gene embeddingsFangfang Guo, Dailin Gan, Jun LiPageof 18