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Bulletin of Mathematical Biology|March 5, 2011
Optimality of the neighbor joining algorithm and faces of the balanced minimum evolution polytopeDavid C Haws, Terrell L Hodge, Ruriko Yoshida
BMC Bioinformatics|August 23, 2012
A support vector machine based test for incongruence between sets of trees in tree spaceDavid C Haws, Peter Huggins, Eric M O'Neill, et al.
Frontiers in Neuroscience|August 31, 2010
Statistical phylogenetic tree analysis using differences of meansElissaveta Arnaoudova, David C Haws, Peter Huggins, et al.
Molecular Biology and Evolution|March 2, 2016
Efficiencies of the NJp, Maximum Likelihood, and Bayesian Methods of Phylogenetic Construction for Compositional and Noncompositional GenesRuriko Yoshida, Masatoshi Nei
Frontiers in Psychiatry|March 23, 2011
Statistical Analysis on Detecting Recombination Sites in DNA-β Satellites Associated with Old World GeminivirusesKai Xu, Ruriko Yoshida
Bioinformatics (Oxford, England)|June 10, 2020
Tropical principal component analysis on the space of phylogenetic treesRobert Page, Ruriko Yoshida, Leon Zhang
Molecular Biology and Evolution|November 11, 2005
Beyond pairwise distances: neighbor-joining with phylogenetic diversity estimatesDan Levy, Ruriko Yoshida, Lior Pachter
IEEE/ACM Transactions on Computational Biology and Bioinformatics|January 24, 2017
Normalizing Kernels in the Billera-Holmes-Vogtmann TreespaceGrady Weyenberg, Ruriko Yoshida, Daniel Howe
Bulletin of Mathematical Biology|September 13, 2018
Tropical Principal Component Analysis and Its Application to PhylogeneticsRuriko Yoshida, Leon Zhang, Xu Zhang
IEEE/ACM Transactions on Computational Biology and Bioinformatics|June 28, 2024
Tropical Density Estimation of Phylogenetic TreesRuriko Yoshida, David Barnhill, Keiji Miura, et al.
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