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Biochemistry|August 3, 2017
Effects of Catalytic Action and Ligand Binding on Conformational Ensembles of Adenylate KinaseEmre Onuk, John Badger, Yu Jing Wang, et al.Journal of Structural and Functional Genomics|January 6, 2010
Characterization of proteins with wide-angle X-ray solution scattering (WAXS)Lee MakowskiACS Biomaterials Science & Engineering|January 19, 2021
The Structural Basis of Amyloid Strains in Alzheimer's DiseaseLee MakowskiThe Journal of Chemical Physics|January 26, 2011
Density-dependent analysis of nonequilibrium paths improves free energy estimates II. A Feynman-Kac formalismDavid D L Minh, Suriyanarayanan VaikuntanathanJournal of Chemical Theory and Computation|September 12, 2017
Hamiltonian Monte Carlo with Constrained Molecular Dynamics as Gibbs SamplingLaurentiu Spiridon, David D L MinhJournal of Computer-Aided Molecular Design|August 8, 2018
Alchemical Grid Dock (AlGDock) calculations in the D3R Grand Challenge 3 : Binding free energies between flexible ligands and rigid receptorsBing Xie, David D L MinhThe Journal of Chemical Physics|March 17, 2018
Implicit ligand theory for relative binding free energiesTrung Hai Nguyen, David D L MinhThe Journal of Chemical Physics|January 19, 2011
Estimating equilibrium ensemble averages using multiple time slices from driven nonequilibrium processes: theory and application to free energies, moments, and thermodynamic length in single-molecule pulling experimentsDavid D L Minh, John D ChoderaThe Journal of Physical Chemistry. B|December 20, 2007
Springs and speeds in free energy reconstruction from irreversible single-molecule pulling experimentsDavid D L Minh, J Andrew McCammonPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|April 28, 2009
Path integral analysis of Jarzynski's equality: analytical resultsDavid D L Minh, Artur B AdibPageof 14