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Journal of Molecular Biology|August 4, 2009
Sampling bottlenecks in de novo protein structure predictionDavid E Kim, Ben Blum, Philip Bradley, et al.Proteins|October 13, 2006
Improved beta-protein structure prediction by multilevel optimization of nonlocal strand pairings and local backbone conformationPhilip Bradley, David BakerProteins|February 5, 2010
Feature space resampling for protein conformational searchBen Blum, Michael I Jordan, David BakerJournal of Molecular Biology|September 11, 2007
Protein-protein docking with backbone flexibilityChu Wang, Philip Bradley, David BakerJournal of Chemical Theory and Computation|October 22, 2016
Simultaneous Optimization of Biomolecular Energy Functions on Features from Small Molecules and MacromoleculesHahnbeom Park, Philip Bradley, Per Greisen, et al.Journal of Molecular Biology|March 20, 2012
Improved modeling of side-chain--base interactions and plasticity in protein--DNA interface designSummer B Thyme, David Baker, Philip BradleyProceedings of the National Academy of Sciences of the United States of America|November 6, 2007
Prediction of the structure of symmetrical protein assembliesIngemar André, Philip Bradley, Chu Wang, et al.Science (New York, N.Y.)|September 17, 2005
Toward high-resolution de novo structure prediction for small proteinsPhilip Bradley, Kira M S Misura, David BakerProteins|September 28, 2005
Free modeling with Rosetta in CASP6Philip Bradley, Lars Malmström, Bin Qian, et al.Nucleic Acids Research|June 25, 2004
Protein structure prediction and analysis using the Robetta serverDavid E Kim, Dylan Chivian, David BakerPageof 127