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Current Opinion in Toxicology|April 22, 2024
Unique challenges and best practices for single cell transcriptomic analysis in toxicologyDavid Filipovic, Omar Kana, Daniel Marri, et al.
Scientific Reports|May 12, 2023
Prediction of mammalian tissue-specific CLOCK-BMAL1 binding to E-box DNA motifsDaniel Marri, David Filipovic, Omar Kana, et al.
Patterns (New York, N.Y.)|August 21, 2023
Generative modeling of single-cell gene expression for dose-dependent chemical perturbationsOmar Kana, Rance Nault, David Filipovic, et al.
Toxicological Sciences : an Official Journal of the Society of Toxicology|September 14, 2023
Interpretable predictive models of genome-wide aryl hydrocarbon receptor-DNA binding reveal tissue-specific binding determinantsDavid Filipovic, Wenjie Qi, Omar Kana, et al.
STAR Protocols|July 12, 2025
Protocol for predicting single- and multiple-dose-dependent gene expression using deep generative learningDerek E Bowman, Vishal Panda, Daniel Marri, et al.
Hepatology Communications|November 2, 2021
A Negative Feedback Loop and Transcription Factor Cooperation Regulate Zonal Gene Induction by 2, 3, 7, 8-Tetrachlorodibenzo-p-Dioxin in the Mouse LiverYongliang Yang, David Filipovic, Sudin Bhattacharya
Environment International|October 22, 2024
Epigenetic toxicity of heavy metals - implications for embryonic stem cellsNicholas Kim, David Filipovic, Sudin Bhattacharya, et al.
Environment International|December 28, 2020
Pregnancy-specific physiologically-based toxicokinetic models for bisphenol A and bisphenol SJeremy Gingrich, David Filipovic, Rory Conolly, et al.
Expert Opinion on Drug Metabolism & Toxicology|August 25, 2022
Pharmacokinetic and toxicodynamic concepts in idiosyncratic, drug-induced liver injuryRobert A Roth, Omar Kana, David Filipovic, et al.
NPJ Systems Biology and Applications|August 1, 2025
Dynamical systems theory as an organizing principle for single-cell biologySamia Islam, Sudin Bhattacharya
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