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Systematic Biology|January 18, 2025
Inference of multiple mergers while dating a pathogen phylogenyDavid Helekal, Jere Koskela, Xavier DidelotJournal of Theoretical Biology|April 15, 2025
Ancestral process for infectious disease outbreaks with superspreadingXavier Didelot, David Helekal, Ian RobertsPlos Computational Biology|April 21, 2025
Bayesian Inference of Pathogen Phylogeography using the Structured Coalescent ModelIan Roberts, Richard G Everitt, Jere Koskela, et al.Bioinformatics (Oxford, England)|November 28, 2022
Distinguishing imported cases from locally acquired cases within a geographically limited genomic sample of an infectious diseaseXavier Didelot, David Helekal, Michelle Kendall, et al.Journal of the Royal Society, Interface|June 14, 2023
Estimating the fitness cost and benefit of antimicrobial resistance from pathogen genomic dataDavid Helekal, Matt Keeling, Yonatan H Grad, et al.Systematic Biology|December 11, 2021
Bayesian Inference of Clonal Expansions in a Dated PhylogenyDavid Helekal, Alice Ledda, Erik Volz, et al.Statistical Applications in Genetics and Molecular Biology|June 14, 2018
Multi-locus data distinguishes between population growth and multiple merger coalescentsJere KoskelaMethods in Molecular Biology (Clifton, N.J.)|May 7, 2021
Phylogenetic Methods for Genome-Wide Association Studies in BacteriaXavier DidelotMathematical Biosciences|March 10, 2019
Robust model selection between population growth and multiple merger coalescentsJere Koskela, Maite Wilke BerenguerMethods in Molecular Biology (Clifton, N.J.)|May 31, 2023
Phylogenetic Analysis of Bacterial Pathogen GenomesXavier DidelotPageof 21