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Journal of Structural Biology|December 30, 2006
A study of collective atomic fluctuations and cooperativity in the U1A-RNA complex based on molecular dynamics simulationsBethany L Kormos, Anne M Baranger, David L BeveridgeJournal of Biomolecular Structure & Dynamics|July 3, 2019
Spectral analysis of molecular dynamics simulations on PDZ: MD sectorsBharat Lakhani, Kelly M Thayer, Emily Black, et al.Journal of Medicinal Chemistry|August 2, 2007
Identification of an aminoacridine derivative that binds to RNA tetraloopsZhaohui Yan, Shweta Sikri, David L Beveridge, et al.Biophysical Journal|March 11, 2008
Prokaryotic gene finding based on physicochemical characteristics of codons calculated from molecular dynamics simulationsPoonam Singhal, B Jayaram, Surjit B Dixit, et al.Biophysical Journal|June 5, 2014
A statistical thermodynamic model for investigating the stability of DNA sequences from oligonucleotides to genomesGarima Khandelwal, Rebecca A Lee, B Jayaram, et al.Journal of Molecular Biology|July 3, 2007
Affinity and specificity of protein U1A-RNA complex formation based on an additive component free energy modelBethany L Kormos, Yulia Benitex, Anne M Baranger, et al.Biopolymers|November 10, 2005
Molecular dynamics simulation studies of a protein-RNA complex with a selectively modified binding interfaceYing Zhao, Bethany L Kormos, David L Beveridge, et al.Biophysical Journal|June 17, 2023
Molecular dynamics of mismatch detection-How MutS uses indirect readout to find errors in DNAAbhilash Jayaraj, Kelly M Thayer, David L Beveridge, et al.The Journal of Physical Chemistry. B|January 31, 2017
Evolutionary Covariance Combined with Molecular Dynamics Predicts a Framework for Allostery in the MutS DNA Mismatch Repair ProteinBharat Lakhani, Kelly M Thayer, Manju M Hingorani, et al.Biopolymers|March 9, 2011
U1A protein-stem loop 2 RNA recognition: prediction of structural differences from protein mutationsBethany L Kormos, Susan N Pieniazek, David L Beveridge, et al.Pageof 3