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Journal of Molecular Graphics & Modelling
|
May 8, 2015
Recovery of the wild type atomic flexibility in the HIV-1 protease double mutants
Valderes De Conto, Antônio S K Braz, David Perahia, et al.
Journal of Computational Chemistry
|
September 13, 2014
Polarizable molecular mechanics studies of Cu(I)/Zn(II) superoxide dismutase: bimetallic binding site and structured waters
Nohad Gresh, Krystel El Hage, David Perahia, et al.
Scientific Reports
|
June 24, 2021
Insights into the substrate binding mechanism of SULT1A1 through molecular dynamics with excited normal modes simulations
Balint Dudas, Daniel Toth, David Perahia, et al.
Journal of Molecular Biology
|
November 4, 2008
Collective motions in glucosamine-6-phosphate synthase: influence of ligand binding and role in ammonia channelling and opening of the fructose-6-phosphate binding site
Nicolas Floquet, Philippe Durand, Bernard Maigret, et al.
European Biophysics Journal : EBJ
|
March 19, 2010
How to choose relevant multiple receptor conformations for virtual screening: a test case of Cdk2 and normal mode analysis
Olivier Sperandio, Liliane Mouawad, Eulalie Pinto, et al.
Journal of Chemical Information and Modeling
|
June 22, 2024
MDFF_NM: Improved Molecular Dynamics Flexible Fitting into Cryo-EM Density Maps with a Multireplica Normal Mode-Based Search
Zakaria L Dahmani, Ana Ligia Scott, Catherine Vénien-Bryan, et al.
Journal of Chemical Theory and Computation
|
June 11, 2026
Adaptive Normal Mode Sampling (aMDeNM) Enhances Exploration of Protein Conformational Space and Reveals the Functional Role of Frequency Coupling
Pedro T Resende-Lara, Maurício G S Costa, Balint Dudas, et al.
FEBS Letters
|
September 12, 2006
Normal mode analysis as a prerequisite for drug design: application to matrix metalloproteinases inhibitors
Nicolas Floquet, Jean-Didier Marechal, Marie-Ange Badet-Denisot, et al.
Journal of Chemical Theory and Computation
|
November 26, 2015
Free Energy Profiles along Consensus Normal Modes Provide Insight into HIV-1 Protease Flap Opening
Paulo R Batista, Gaurav Pandey, Pedro G Pascutti, et al.
Journal of Chemical Theory and Computation
|
December 12, 2024
Extended Sampling of Macromolecular Conformations from Uniformly Distributed Points on Multidimensional Normal Mode Hyperspheres
Antoniel A S Gomes, Mauricio G S Costa, Maxime Louet, et al.
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Search research articles
Search
Showing results (31-40 of 68) with videos related to
Sort By:
Page
of 7
Journal of Molecular Graphics & Modelling
|
May 8, 2015
Recovery of the wild type atomic flexibility in the HIV-1 protease double mutants
Valderes De Conto, Antônio S K Braz, David Perahia, et al.
Journal of Computational Chemistry
|
September 13, 2014
Polarizable molecular mechanics studies of Cu(I)/Zn(II) superoxide dismutase: bimetallic binding site and structured waters
Nohad Gresh, Krystel El Hage, David Perahia, et al.
Scientific Reports
|
June 24, 2021
Insights into the substrate binding mechanism of SULT1A1 through molecular dynamics with excited normal modes simulations
Balint Dudas, Daniel Toth, David Perahia, et al.
Journal of Molecular Biology
|
November 4, 2008
Collective motions in glucosamine-6-phosphate synthase: influence of ligand binding and role in ammonia channelling and opening of the fructose-6-phosphate binding site
Nicolas Floquet, Philippe Durand, Bernard Maigret, et al.
European Biophysics Journal : EBJ
|
March 19, 2010
How to choose relevant multiple receptor conformations for virtual screening: a test case of Cdk2 and normal mode analysis
Olivier Sperandio, Liliane Mouawad, Eulalie Pinto, et al.
Journal of Chemical Information and Modeling
|
June 22, 2024
MDFF_NM: Improved Molecular Dynamics Flexible Fitting into Cryo-EM Density Maps with a Multireplica Normal Mode-Based Search
Zakaria L Dahmani, Ana Ligia Scott, Catherine Vénien-Bryan, et al.
Journal of Chemical Theory and Computation
|
June 11, 2026
Adaptive Normal Mode Sampling (aMDeNM) Enhances Exploration of Protein Conformational Space and Reveals the Functional Role of Frequency Coupling
Pedro T Resende-Lara, Maurício G S Costa, Balint Dudas, et al.
FEBS Letters
|
September 12, 2006
Normal mode analysis as a prerequisite for drug design: application to matrix metalloproteinases inhibitors
Nicolas Floquet, Jean-Didier Marechal, Marie-Ange Badet-Denisot, et al.
Journal of Chemical Theory and Computation
|
November 26, 2015
Free Energy Profiles along Consensus Normal Modes Provide Insight into HIV-1 Protease Flap Opening
Paulo R Batista, Gaurav Pandey, Pedro G Pascutti, et al.
Journal of Chemical Theory and Computation
|
December 12, 2024
Extended Sampling of Macromolecular Conformations from Uniformly Distributed Points on Multidimensional Normal Mode Hyperspheres
Antoniel A S Gomes, Mauricio G S Costa, Maxime Louet, et al.
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