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Nucleic Acids Research|May 17, 2012
FTMAP: extended protein mapping with user-selected probe moleculesChi Ho Ngan, Tanggis Bohnuud, Scott E Mottarella, et al.Journal of Chemical Information and Modeling|October 4, 2022
Conservation of Allosteric Ligand Binding Sites in G-Protein Coupled ReceptorsAmanda E Wakefield, Dávid Bajusz, Dima Kozakov, et al.Structure (London, England : 1993)|July 11, 2020
Performance and Its Limits in Rigid Body Protein-Protein DockingIsrael T Desta, Kathryn A Porter, Bing Xia, et al.Biophysical Journal|August 5, 2008
DARS (Decoys As the Reference State) potentials for protein-protein dockingGwo-Yu Chuang, Dima Kozakov, Ryan Brenke, et al.Nature Protocols|April 10, 2015
The FTMap family of web servers for determining and characterizing ligand-binding hot spots of proteinsDima Kozakov, Laurie E Grove, David R Hall, et al.Proteins|September 19, 2007
ClusPro: performance in CAPRI rounds 6-11 and the new serverStephen R Comeau, Dima Kozakov, Ryan Brenke, et al.Journal of Molecular Biology|March 26, 2025
E-FTMap: A Protein Structure Based Pharmacophore Identification Server for Guiding Fragment ExpansionOmeir Khan, George Jones, Dima Kozakov, et al.Biochemistry|November 25, 2015
Conservation and Covariance in Small Bacterial Phosphoglycosyltransferases Identify the Functional Catalytic CoreVinita Lukose, Lingqi Luo, Dima Kozakov, et al.Proteins|September 14, 2007
Docking with PIPER and refinement with SDU in rounds 6-11 of CAPRIYang Shen, Ryan Brenke, Dima Kozakov, et al.Annual Review of Biophysics|January 10, 2023
Critical Assessment of Methods for Predicting the 3D Structure of Proteins and Protein ComplexesShoshana J Wodak, Sandor Vajda, Marc F Lensink, et al.Pageof 33