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Plant Physiology|February 25, 2014
A plastid without a genome: evidence from the nonphotosynthetic green algal genus PolytomellaDavid Roy Smith, Robert W LeeBMC Evolutionary Biology|May 23, 2008
Nucleotide diversity in the mitochondrial and nuclear compartments of Chlamydomonas reinhardtii: investigating the origins of genome architectureDavid Roy Smith, Robert W LeeThe Journal of Eukaryotic Microbiology|January 13, 2012
Twenty-fold difference in evolutionary rates between the mitochondrial and plastid genomes of species with secondary red plastidsDavid Roy Smith, Patrick J KeelingProceedings of the National Academy of Sciences of the United States of America|March 28, 2015
Mitochondrial and plastid genome architecture: Reoccurring themes, but significant differences at the extremesDavid Roy Smith, Patrick J KeelingThe Journal of Eukaryotic Microbiology|July 19, 2011
Nucleotide diversity of the colorless green alga Polytomella parva (Chlorophyceae, Chlorophyta): high for the mitochondrial telomeres, surprisingly low everywhere elseDavid Roy Smith, Robert W LeeG3 (Bethesda, Md.)|September 23, 2017
Pervasive, Genome-Wide Transcription in the Organelle Genomes of Diverse Plastid-Bearing ProtistsMatheus Sanitá Lima, David Roy SmithBriefings in Bioinformatics|September 29, 2016
Unraveling chloroplast transcriptomes with ChloroSeq, an organelle RNA-Seq bioinformatics pipelineDavid Roy Smith, Matheus Sanitá LimaAnnual Review of Microbiology|July 1, 2016
Protists and the Wild, Wild West of Gene Expression: New Frontiers, Lawlessness, and MisfitsDavid Roy Smith, Patrick J KeelingSTAR Protocols|July 5, 2021
Protocol for HSDFinder: Identifying, annotating, categorizing, and visualizing duplicated genes in eukaryotic genomesXi Zhang, Yining Hu, David Roy SmithFrontiers in Bioinformatics|October 28, 2022
HSDFinder: A BLAST-Based Strategy for Identifying Highly Similar Duplicated Genes in Eukaryotic GenomesXi Zhang, Yining Hu, David Roy SmithPageof 18