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Methods in Molecular Biology (Clifton, N.J.)|December 15, 2022
Analyzing Prokaryotic Transcriptomics in the Light of Genome Data with the MicroScope PlatformDavid Roche, Alexandra Calteau, David VallenetBMC Bioinformatics|November 18, 2015
A new network representation of the metabolism to detect chemical transformation modulesMaria Sorokina, Claudine Medigue, David VallenetBioinformatics (Oxford, England)|May 15, 2025
ASMC: investigating the amino acid diversity of enzyme active sitesThomas Bailly, Eddy Elisée, David VallenetBMC Genomics|February 16, 2012
Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolCStefan Engelen, David Vallenet, Claudine Médigue, et al.BMC Bioinformatics|April 13, 2018
GROOLS: reactive graph reasoning for genome annotation through biological processesJonathan Mercier, Adrien Josso, Claudine Médigue, et al.Journal of Bacteriology|February 27, 2026
Identification of specific metabolic capacities associated with major extraintestinal pathogenic <i>Escherichia coli</i> lineagesGuilhem Royer, Françoise Chau, David Vallenet, et al.Biology Direct|June 8, 2014
Profiling the orphan enzymesMaria Sorokina, Mark Stam, Claudine Médigue, et al.Bioinformatics (Oxford, England)|December 31, 2020
panRGP: a pangenome-based method to predict genomic islands and explore their diversityAdelme Bazin, Guillaume Gautreau, Claudine Médigue, et al.Nucleic Acids Research|June 26, 2003
AMIGene: Annotation of MIcrobial GenesStéphanie Bocs, Stéphane Cruveiller, David Vallenet, et al.Plos Computational Biology|June 14, 2012
The CanOE strategy: integrating genomic and metabolic contexts across multiple prokaryote genomes to find candidate genes for orphan enzymesAdam Alexander Thil Smith, Eugeni Belda, Alain Viari, et al.Pageof 9