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BMC Bioinformatics|December 24, 2015
Evolution of genes neighborhood within reconciled phylogenies: an ensemble approachCedric Chauve, Yann Ponty, João ZanettiJournal of Computational Chemistry|November 11, 2014
Expected degree for RNA secondary structure networksPeter CloteBMC Bioinformatics|October 14, 2022
IndelsRNAmute: predicting deleterious multiple point substitutions and indels mutationsAlexander Churkin, Yann Ponty, Danny BarashAlgorithms for Molecular Biology : AMB|April 3, 2022
Tree diet: reducing the treewidth to unlock FPT algorithms in RNA bioinformaticsBertrand Marchand, Yann Ponty, Laurent BulteauNucleic Acids Research|April 21, 2016
Combining structure probing data on RNA mutants with evolutionary information reveals RNA-binding interfacesVladimir Reinharz, Yann Ponty, Jérôme WaldispühlBioinformatics (Oxford, England)|September 9, 2017
Efficient approximations of RNA kinetics landscape using non-redundant samplingJuraj Michálik, Hélène Touzet, Yann PontyBioinformatics (Oxford, England)|April 29, 2009
VARNA: Interactive drawing and editing of the RNA secondary structureKévin Darty, Alain Denise, Yann PontyJournal of Mathematical Biology|February 16, 2020
Counting and sampling gene family evolutionary histories in the duplication-loss and duplication-loss-transfer modelsCedric Chauve, Yann Ponty, Michael WallnerBioinformatics (Oxford, England)|April 1, 2006
GenRGenS: software for generating random genomic sequences and structuresYann Ponty, Michel Termier, Alain DenisePageof 10