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Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|October 19, 2013
Using structural and evolutionary information to detect and correct pyrosequencing errors in noncoding RNAsVladimir Reinharz, Yann Ponty, Jérôme WaldispühlMethods in Molecular Biology (Clifton, N.J.)|May 23, 2024
Developing Complex RNA Design Applications in the Infrared FrameworkHua-Ting Yao, Yann Ponty, Sebastian WillBriefings in Bioinformatics|March 18, 2016
The BRaliBase dent-a tale of benchmark design and interpretationBenedikt Löwes, Cedric Chauve, Yann Ponty, et al.Plos One|October 22, 2015
Network Properties of the Ensemble of RNA StructuresPeter Clote, Amir BayeganJournal of Mathematical Biology|June 23, 2006
Symmetric time warping, Boltzmann pair probabilities and functional genomicsPeter Clote, Jürg StraubhaarJournal of Mathematical Biology|December 25, 2012
Combinatorics of locally optimal RNA secondary structuresEric Fusy, Peter CloteAlgorithms for Molecular Biology : AMB|October 25, 2025
RNA inverse folding can be solved in linear time for structures without isolated stacks or base pairsThéo Boury, Samuel Gardelle, Laurent Bulteau, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|February 17, 2015
Fast, approximate kinetics of RNA foldingEvan Senter, Peter CloteBMC Bioinformatics|April 27, 2019
Fixed-parameter tractable sampling for RNA design with multiple target structuresStefan Hammer, Wei Wang, Sebastian Will, et al.Bioinformatics (Oxford, England)|June 10, 2010
Thermodynamics of RNA structures by Wang-Landau samplingFeng Lou, Peter ClotePageof 10