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Nucleic Acids Research|August 1, 2020
IPANEMAP: integrative probing analysis of nucleic acids empowered by multiple accessibility profilesAfaf Saaidi, Delphine Allouche, Mireille Regnier, et al.Plos One|November 12, 2015
RNA Thermodynamic Structural EntropyJuan Antonio Garcia-Martin, Peter CloteAlgorithms for Molecular Biology : AMB|October 26, 2013
Asymptotic structural properties of quasi-random saturated structures of RNAPeter Clote, Evangelos Kranakis, Danny KrizancBulletin of Mathematical Biology|October 22, 2013
Asymptotic number of hairpins of saturated RNA secondary structuresPeter Clote, Evangelos Kranakis, Danny KrizancJournal of Mathematical Biology|February 12, 2014
RNA folding pathways and kinetics using 2D energy landscapesEvan Senter, Ivan Dotu, Peter CloteBioinformatics (Oxford, England)|May 7, 2016
ecceTERA: comprehensive gene tree-species tree reconciliation using parsimonyEdwin Jacox, Cedric Chauve, Gergely J Szöllősi, et al.Bioinformatics (Oxford, England)|February 4, 2021
RNAxplorer: harnessing the power of guiding potentials to sample RNA landscapesGregor Entzian, Ivo L Hofacker, Yann Ponty, et al.Nucleic Acids Research|May 18, 2016
incaRNAfbinv: a web server for the fragment-based design of RNA sequencesMatan Drory Retwitzer, Vladimir Reinharz, Yann Ponty, et al.Algorithms for Molecular Biology : AMB|December 2, 2023
Automated design of dynamic programming schemes for RNA folding with pseudoknotsBertrand Marchand, Sebastian Will, Sarah J Berkemer, et al.Algorithms for Molecular Biology : AMB|March 17, 2024
Infrared: a declarative tree decomposition-powered framework for bioinformaticsHua-Ting Yao, Bertrand Marchand, Sarah J Berkemer, et al.Pageof 10