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Nature Communications|September 2, 2020
Entropy of a bacterial stress response is a generalizable predictor for fitness and antibiotic sensitivityZeyu Zhu, Defne Surujon, Juan C Ortiz-Marquez, et al.Bioinformatics (Oxford, England)|December 19, 2024
CParty: hierarchically constrained partition function of RNA pseudoknotsMateo Gray, Luke Trinity, Ulrike Stege, et al.Bioinformatics (Oxford, England)|January 24, 2020
incaRNAfbinv 2.0: a webserver and software with motif control for fragment-based design of RNAsMatan Drory Retwitzer, Vladimir Reinharz, Alexander Churkin, et al.Nucleic Acids Research|May 24, 2013
RNAiFold: a web server for RNA inverse folding and molecular designJuan Antonio Garcia-Martin, Peter Clote, Ivan DotuBMC Bioinformatics|April 28, 2012
Maximum expected accuracy structural neighbors of an RNA secondary structurePeter Clote, Feng Lou, William A LorenzNucleic Acids Research|May 29, 2015
RNAiFold 2.0: a web server and software to design custom and Rfam-based RNA moleculesJuan Antonio Garcia-Martin, Ivan Dotu, Peter CloteJournal of Bioinformatics and Computational Biology|April 23, 2013
RNAiFOLD: a constraint programming algorithm for RNA inverse folding and molecular designJuan Antonio Garcia-Martin, Peter Clote, Ivan DotuNucleic Acids Research|June 18, 2009
RNAmutants: a web server to explore the mutational landscape of RNA secondary structuresJerome Waldispühl, Srinivas Devadas, Bonnie Berger, et al.Plos Computational Biology|December 17, 2013
Protein-protein interactions in a crowded environment: an analysis via cross-docking simulations and evolutionary informationAnne Lopes, Sophie Sacquin-Mora, Viktoriya Dimitrova, et al.Briefings in Bioinformatics|January 4, 2017
Design of RNAs: comparing programs for inverse RNA foldingAlexander Churkin, Matan Drory Retwitzer, Vladimir Reinharz, et al.Pageof 10