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Cell Systems|August 9, 2025
Biophysical metabolic modeling of complex bacterial colony morphologyIlija Dukovski, Lauren Golden, Jing Zhang, et al.Msystems|June 20, 2023
Inferring microbial co-occurrence networks from amplicon data: a systematic evaluationDileep Kishore, Gabriel Birzu, Zhenjun Hu, et al.Plos Computational Biology|April 16, 2016
Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0Brian R Granger, Yi-Chien Chang, Yan Wang, et al.Communications Biology|April 3, 2024
Multi-Attribute Subset Selection enables prediction of representative phenotypes across microbial populationsKonrad Herbst, Taiyao Wang, Elena J Forchielli, et al.Science (New York, N.Y.)|June 4, 2011
Diminishing returns epistasis among beneficial mutations decelerates adaptationHsin-Hung Chou, Hsuan-Chao Chiu, Nigel F Delaney, et al.Iscience|July 5, 2022
Computational design and engineering of an Escherichia coli strain producing the nonstandard amino acid para-aminophenylalanineAli R Zomorrodi, Colin Hemez, Pol Arranz-Gibert, et al.Microbiome|March 29, 2021
animalcules: interactive microbiome analytics and visualization in RYue Zhao, Anthony Federico, Tyler Faits, et al.Cell Reports|September 14, 2017
Genome-Scale Architecture of Small Molecule Regulatory Networks and the Fundamental Trade-Off between Regulation and Enzymatic ActivityEd Reznik, Dimitris Christodoulou, Joshua E Goldford, et al.Genome Biology|September 24, 2008
Model-driven analysis of experimentally determined growth phenotypes for 465 yeast gene deletion mutants under 16 different conditionsEvan S Snitkin, Aimée M Dudley, Daniel M Janse, et al.Molecular Metabolism|May 28, 2021
Antagonistic epistasis of Hnf4α and FoxO1 metabolic networks through enhancer interactions in β-cell functionTaiyi Kuo, Wen Du, Yasutaka Miyachi, et al.Pageof 13