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Plos One|July 30, 2011
Functional conservation of cis-regulatory elements of heat-shock genes over long evolutionary distancesZhengying He, Kelsie Eichel, Ilya RuvinskyGenome Biology and Evolution|April 3, 2012
Family size and turnover rates among several classes of small non-protein-coding RNA genes in Caenorhabditis nematodesPaul Po-Shen Wang, Ilya RuvinskyPlos Genetics|October 3, 2012
Coevolution within and between regulatory loci can preserve promoter function despite evolutionary rate accelerationAntoine Barrière, Kacy L Gordon, Ilya RuvinskyNature Reviews. Genetics|June 19, 2012
Comparative studies of gene expression and the evolution of gene regulationIrene Gallego Romero, Ilya Ruvinsky, Yoav GiladPlos Genetics|June 10, 2011
Distinct functional constraints partition sequence conservation in a cis-regulatory elementAntoine Barrière, Kacy L Gordon, Ilya RuvinskyGenetics|July 11, 2025
The Fruit Fly Auxodrome: a computer vision setup for longitudinal studies of Drosophila developmentChangyuan Wang, Denis F Faerberg, Stanislav Y Shvartsman, et al.Plos Genetics|May 29, 2015
Phylum-Level Conservation of Regulatory Information in Nematodes despite Extensive Non-coding Sequence DivergenceKacy L Gordon, Robert K Arthur, Ilya RuvinskyDevelopmental Biology|October 19, 2006
Detection of broadly expressed neuronal genes in C. elegansIlya Ruvinsky, Uwe Ohler, Christopher B Burge, et al.Nature Communications|January 19, 2023
Sex-specificity of the C. elegans metabolomeRussell N Burkhardt, Alexander B Artyukhin, Erin Z Aprison, et al.Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution|September 26, 2003
Phylogenetic analyses alone are insufficient to determine whether genome duplication(s) occurred during early vertebrate evolutionAmy C Horton, Navin R Mahadevan, Ilya Ruvinsky, et al.Pageof 5