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Current Opinion in Biotechnology|February 22, 2014
The future of whole-cell modelingDerek N Macklin, Nicholas A Ruggero, Markus W CovertMolecular Systems Biology|February 2, 2012
Competing pathways control host resistance to virus via tRNA modification and programmed ribosomal frameshiftingNathaniel D Maynard, Derek N Macklin, Karla Kirkegaard, et al.Plos Computational Biology|October 25, 2012
Determining host metabolic limitations on viral replication via integrated modeling and experimental perturbationElsa W Birch, Nicholas A Ruggero, Markus W CovertNucleic Acids Research|November 24, 2012
WholeCellKB: model organism databases for comprehensive whole-cell modelsJonathan R Karr, Jayodita C Sanghvi, Derek N Macklin, et al.Nature Protocols|December 22, 2017
Live-cell measurements of kinase activity in single cells using translocation reportersTakamasa Kudo, Stevan Jeknić, Derek N Macklin, et al.Plos One|January 10, 2013
Single-cell and population NF-κB dynamic responses depend on lipopolysaccharide preparationMiriam V Gutschow, Jacob J Hughey, Nicholas A Ruggero, et al.Cell|July 24, 2012
A whole-cell computational model predicts phenotype from genotypeJonathan R Karr, Jayodita C Sanghvi, Derek N Macklin, et al.Cell Systems|April 12, 2017
Measuring Signaling and RNA-Seq in the Same Cell Links Gene Expression to Dynamic Patterns of NF-κB ActivationKeara Lane, David Van Valen, Mialy M DeFelice, et al.Mbio|September 21, 2017
Combining Comprehensive Analysis of Off-Site Lambda Phage Integration with a CRISPR-Based Means of Characterizing Downstream PhysiologyYu Tanouchi, Markus W CovertPageof 7