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F1000Research|November 16, 2018
Enterobacterhormaechei subsp. hoffmannii subsp. nov., Enterobacter hormaechei subsp. xiangfangensis comb. nov., Enterobacter roggenkampii sp. nov., and Enterobacter muelleri is a later heterotypic synonym of Enterobacter asburiae based on computational analysis of sequenced Enterobacter genomesGranger G Sutton, Lauren M Brinkac, Thomas H Clarke, et al.Journal of Hepatology|February 14, 2012
Bacterial translocation and changes in the intestinal microbiome in mouse models of liver diseaseDerrick E Fouts, Manolito Torralba, Karen E Nelson, et al.Microbiology Spectrum|April 15, 2025
Insertion sequence-mediated phage resistance contributes to attenuated colonization of cytolytic Enterococcus faecalis variants in the gutJumpei Fujiki, Tomohiro Nakamura, Henriette Kreimeyer, et al.BMC Bioinformatics|June 28, 2018
PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomesThomas H Clarke, Lauren M Brinkac, Jason M Inman, et al.Hepatology (Baltimore, Md.)|January 11, 2023
Any alcohol use in NAFLD patients is associated with significant changes to the intestinal viromeCynthia L Hsu, Sonja Lang, Münevver Demir, et al.Bioinformatics (Oxford, England)|January 29, 2017
LOCUST: a custom sequence locus typer for classifying microbial isolatesLauren M Brinkac, Erin Beck, Jason Inman, et al.Bioinformatics Advances|February 19, 2026
cAMRah: a scalable and portable workflow for harmonized antimicrobial resistance gene prediction from bacterial genomesDaniella L Matute, Thomas H Clarke, Andrew R LaPointe, et al.Molecular Plant-Microbe Interactions : MPMI|February 13, 2003
A pseudomonas syringae pv. tomato DC3000 Hrp (Type III secretion) deletion mutant expressing the Hrp system of bean pathogen P. syringae pv. syringae 61 retains normal host specificity for tomatoDerrick E Fouts, Jorge L Badel, Adela R Ramos, et al.Genome Announcements|May 3, 2014
Genome Sequences of Three Frequently Used Listeria monocytogenes and Listeria ivanovii StrainsJochen Klumpp, Titu Staubli, Sibylle Schmitter, et al.BMC Bioinformatics|January 8, 2019
OMeta: an ontology-based, data-driven metadata tracking systemIndresh Singh, Mehmet Kuscuoglu, Derek M Harkins, et al.Pageof 12