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The Journal of Biological Chemistry|March 25, 2009
A promoter recognition mechanism common to yeast mitochondrial and phage t7 RNA polymerasesDhananjaya Nayak, Qing Guo, Rui SousaJournal of Molecular Biology|June 21, 2007
Functional architecture of T7 RNA polymerase transcription complexesDhananjaya Nayak, Qing Guo, Rui SousaJournal of Molecular Biology|January 2, 2008
Mechanism of T7 RNAP pausing and termination at the T7 concatemer junction: a local change in transcription bubble structure drives a large change in transcription complex architectureDhananjaya Nayak, Sylvester Siller, Qing Guo, et al.Journal of Molecular Biology|September 20, 2005
Major conformational changes during T7RNAP transcription initiation coincide with, and are required for, promoter releaseQing Guo, Dhananjaya Nayak, Luis G Brieba, et al.The Journal of Biological Chemistry|January 23, 2025
Drosophila Modulo is essential for transposon silencing and developmental robustnessRasesh Y Parikh, Dhananjaya Nayak, Haifan Lin, et al.Molecular Cell|June 18, 2013
Cys-pair reporters detect a constrained trigger loop in a paused RNA polymeraseDhananjaya Nayak, Michael Voss, Tricia Windgassen, et al.Proceedings of the National Academy of Sciences of the United States of America|July 22, 2015
CBR antimicrobials inhibit RNA polymerase via at least two bridge-helix cap-mediated effects on nucleotide additionBrian Bae, Dhananjaya Nayak, Ananya Ray, et al.The Journal of Biological Chemistry|February 15, 2017
Co-chaperone Hsp70/Hsp90-organizing protein (Hop) is required for transposon silencing and Piwi-interacting RNA (piRNA) biogenesisJoseph A Karam, Rasesh Y Parikh, Dhananjaya Nayak, et al.Proceedings of the National Academy of Sciences of the United States of America|June 14, 2017
Trigger loop of RNA polymerase is a positional, not acid-base, catalyst for both transcription and proofreadingTatiana V Mishanina, Michael Z Palo, Dhananjaya Nayak, et al.Nucleic Acids Research|October 23, 2014
Trigger-helix folding pathway and SI3 mediate catalysis and hairpin-stabilized pausing by Escherichia coli RNA polymeraseTricia A Windgassen, Rachel Anne Mooney, Dhananjaya Nayak, et al.Pageof 2