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Briefings in Bioinformatics|June 8, 2024
Integration of protein sequence and protein-protein interaction data by hypergraph learning to identify novel protein complexesSimin Xia, Dianke Li, Xinru Deng, et al.Briefings in Bioinformatics|September 8, 2025
Graph neural network integrated with pretrained protein language model for predicting human-virus protein-protein interactionsLinyang Jiang, Xiaodi Yang, Xiaokun Guo, et al.Genome Biology|March 28, 2026
DeepISO: deep learning-powered prediction of protein-protein interaction rewiring generated by alternative splicingXiaokun Guo, Linyang Jiang, Jiajun Li, et al.Cells|August 26, 2022
Integration of Human Protein Sequence and Protein-Protein Interaction Data by Graph Autoencoder to Identify Novel Protein-Abnormal Phenotype AssociationsYuan Liu, Ruirui He, Yingjie Qu, et al.The Journal of Gene Medicine|June 7, 2024
Insights into the heterogeneity of the tumor microenvironment in lung adenocarcinoma and squamous carcinoma through single-cell transcriptomic analysis: Implications for distinct immunotherapy outcomesXinyun Fang, Dianke Li, Shiyue Wan, et al.Journal of Translational Medicine|September 22, 2022
Comparative profiling of single-cell transcriptome reveals heterogeneity of tumor microenvironment between solid and acinar lung adenocarcinomaDianke Li, Huansha Yu, Junjie Hu, et al.Nature Communications|May 28, 2024
A protein sequence-based deep transfer learning framework for identifying human proteome-wide deubiquitinase-substrate interactionsYuan Liu, Dianke Li, Xin Zhang, et al.Advanced Genetics (Hoboken, N.J.)|January 9, 2023
Single-Cell Transcriptome Identifies Drug-Resistance Signature and Immunosuppressive Microenvironment in Metastatic Small Cell Lung Cancer (Advanced Genetics 2/03)Jing Zhang, Haiping Zhang, Lele Zhang, et al.Advanced Genetics (Hoboken, N.J.)|January 9, 2023
Single-Cell Transcriptome Identifies Drug-Resistance Signature and Immunosuppressive Microenvironment in Metastatic Small Cell Lung CancerJing Zhang, Haiping Zhang, Lele Zhang, et al.Nature Communications|May 20, 2026
Interpretable deep learning framework for mapping E3-substrate binding interfacesDianke Li, Yuting Zhang, Yuan Liu, et al.Pageof 2