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Journal of Proteome Research
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March 10, 2021
XlinkCyNET: A Cytoscape Application for Visualization of Protein Interaction Networks Based on Cross-Linking Mass Spectrometry Identifications
Diogo Borges Lima, Ying Zhu, Fan Liu
Bioinformatics (Oxford, England)
|
November 18, 2021
TDFragMapper: a visualization tool for evaluating experimental parameters in top-down proteomics
Jonathan Dhenin, Diogo Borges Lima, Mathieu Dupré, et al.
Analytical Chemistry
|
March 15, 2022
Optimized TMT-Based Quantitative Cross-Linking Mass Spectrometry Strategy for Large-Scale Interactomic Studies
Max Ruwolt, Lennart Schnirch, Diogo Borges Lima, et al.
Journal of the American Society for Mass Spectrometry
|
April 15, 2021
DiagnoTop: A Computational Pipeline for Discriminating Bacterial Pathogens without Database Search
Diogo Borges Lima, Mathieu Dupré, Marlon Dias Mariano Santos, et al.
Analytical Chemistry
|
August 27, 2025
AIRPred: A Deep Learning Model Predictor for Peptide Intensity Ratios in Cross-Linking Mass Spectrometry Improves Cross-Link Spectrum Matching
Zehong Zhang, Mei Wu, Max Ruwolt, et al.
Analytical Chemistry
|
March 17, 2023
Real-Time Library Search Increases Cross-Link Identification Depth across All Levels of Sample Complexity
Max Ruwolt, Yi He, Diogo Borges Lima, et al.
Journal of Proteome Research
|
September 15, 2020
Optimization of a Top-Down Proteomics Platform for Closely Related Pathogenic Bacterial Discrimination
Mathieu Dupré, Magalie Duchateau, Christian Malosse, et al.
Journal of Proteomics
|
December 18, 2018
Comprehensive identification of protein disulfide bonds with pepsin/trypsin digestion, Orbitrap HCD and Spectrum Identification Machine
Chuanlong Cui, Tong Liu, Tong Chen, et al.
Nature Communications
|
April 17, 2024
Cross-link assisted spatial proteomics to map sub-organelle proteomes and membrane protein topologies
Ying Zhu, Kerem Can Akkaya, Julia Ruta, et al.
Journal of Proteome Research
|
February 1, 2024
RawVegetable 2.0: Refining XL-MS Data Acquisition through Enhanced Quality Control
Louise Ulrich Kurt, Milan Avila Clasen, Ísis Venturi Biembengut, et al.
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of 2
Search research articles
Search
Showing results (1-10 of 15) with videos related to
Sort By:
Page
of 2
Journal of Proteome Research
|
March 10, 2021
XlinkCyNET: A Cytoscape Application for Visualization of Protein Interaction Networks Based on Cross-Linking Mass Spectrometry Identifications
Diogo Borges Lima, Ying Zhu, Fan Liu
Bioinformatics (Oxford, England)
|
November 18, 2021
TDFragMapper: a visualization tool for evaluating experimental parameters in top-down proteomics
Jonathan Dhenin, Diogo Borges Lima, Mathieu Dupré, et al.
Analytical Chemistry
|
March 15, 2022
Optimized TMT-Based Quantitative Cross-Linking Mass Spectrometry Strategy for Large-Scale Interactomic Studies
Max Ruwolt, Lennart Schnirch, Diogo Borges Lima, et al.
Journal of the American Society for Mass Spectrometry
|
April 15, 2021
DiagnoTop: A Computational Pipeline for Discriminating Bacterial Pathogens without Database Search
Diogo Borges Lima, Mathieu Dupré, Marlon Dias Mariano Santos, et al.
Analytical Chemistry
|
August 27, 2025
AIRPred: A Deep Learning Model Predictor for Peptide Intensity Ratios in Cross-Linking Mass Spectrometry Improves Cross-Link Spectrum Matching
Zehong Zhang, Mei Wu, Max Ruwolt, et al.
Analytical Chemistry
|
March 17, 2023
Real-Time Library Search Increases Cross-Link Identification Depth across All Levels of Sample Complexity
Max Ruwolt, Yi He, Diogo Borges Lima, et al.
Journal of Proteome Research
|
September 15, 2020
Optimization of a Top-Down Proteomics Platform for Closely Related Pathogenic Bacterial Discrimination
Mathieu Dupré, Magalie Duchateau, Christian Malosse, et al.
Journal of Proteomics
|
December 18, 2018
Comprehensive identification of protein disulfide bonds with pepsin/trypsin digestion, Orbitrap HCD and Spectrum Identification Machine
Chuanlong Cui, Tong Liu, Tong Chen, et al.
Nature Communications
|
April 17, 2024
Cross-link assisted spatial proteomics to map sub-organelle proteomes and membrane protein topologies
Ying Zhu, Kerem Can Akkaya, Julia Ruta, et al.
Journal of Proteome Research
|
February 1, 2024
RawVegetable 2.0: Refining XL-MS Data Acquisition through Enhanced Quality Control
Louise Ulrich Kurt, Milan Avila Clasen, Ísis Venturi Biembengut, et al.
Page
of 2