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Cell Systems|March 17, 2022
Synthetic gene networks recapitulate dynamic signal decoding and differential gene expressionDirk Benzinger, Serguei Ovinnikov, Mustafa KhammashNature Communications|September 1, 2018
Pulsatile inputs achieve tunable attenuation of gene expression variability and graded multi-gene regulationDirk Benzinger, Mustafa KhammashNature Communications|March 15, 2020
Cell-in-the-loop pattern formation with optogenetically emulated cell-to-cell signalingMelinda Liu Perkins, Dirk Benzinger, Murat Arcak, et al.Metabolic Engineering|March 13, 2023
Optogenetic closed-loop feedback control of the unfolded protein response optimizes protein productionMoritz Benisch, Dirk Benzinger, Sant Kumar, et al.Molecular Cell|May 19, 2018
An Optogenetic Platform for Real-Time, Single-Cell Interrogation of Stochastic Transcriptional RegulationMarc Rullan, Dirk Benzinger, Gregor W Schmidt, et al.Biotechniques|March 26, 2008
Reverse engineering: the architecture of biological networksMustafa KhammashCell Systems|July 27, 2018
Principles of Systems Biology, No. 30Hernan G Garcia, Dirk Benzinger, Marc Rullan, et al.Proceedings of the National Academy of Sciences of the United States of America|October 18, 2022
Universal structural requirements for maximal robust perfect adaptation in biomolecular networksAnkit Gupta, Mustafa KhammashThe Journal of Chemical Physics|February 8, 2006
The finite state projection algorithm for the solution of the chemical master equationBrian Munsky, Mustafa KhammashPageof 9