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Nature Communications|November 6, 2022
Learning the histone codes with large genomic windows and three-dimensional chromatin interactions using transformerDohoon Lee, Jeewon Yang, Sun KimPlos Computational Biology|March 20, 2023
Metheor: Ultrafast DNA methylation heterogeneity calculation from bisulfite read alignmentsDohoon Lee, Bonil Koo, Jeewon Yang, et al.Clinical and Experimental Pediatrics|November 30, 2021
Knowledge-guided artificial intelligence technologies for decoding complex multiomics interactions in cellsDohoon Lee, Sun KimBriefings in Bioinformatics|May 22, 2021
Towards multi-omics characterization of tumor heterogeneity: a comprehensive review of statistical and machine learning approachesDohoon Lee, Youngjune Park, Sun KimBioinformatics (Oxford, England)|September 13, 2019
PRISM: methylation pattern-based, reference-free inference of subclonal makeupDohoon Lee, Sangseon Lee, Sun KimFrontiers in Genetics|November 2, 2020
Learning Cell-Type-Specific Gene Regulation Mechanisms by Multi-Attention Based Deep Learning With Regulatory Latent SpaceMinji Kang, Sangseon Lee, Dohoon Lee, et al.Bioinformatics (Oxford, England)|November 5, 2005
COMPAM :visualization of combining pairwise alignments for multiple genomesDohoon Lee, Jeong-Hyeon Choi, Mehmet M Dalkilic, et al.Scientific Reports|June 16, 2021
Inferring transcriptomic cell states and transitions only from time series transcriptome dataKyuri Jo, Inyoung Sung, Dohoon Lee, et al.Scientific Reports|November 19, 2025
Coevolutionary signals in multiple sequence alignments improve virulence factor prediction with an MSA TransformerTaegyu Kim, Changyun Cho, Dohoon Lee, et al.Elife|December 4, 2024
Human immunodeficiency virus-1 induces host genomic R-loops and preferentially integrates its genome near the R-loop regionsKiwon Park, Dohoon Lee, Jiseok Jeong, et al.Pageof 694