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Journal of Proteome Research|February 5, 2025
Query Mix-Max Method for FDR Estimation Supported by Entrapment QueriesDominik Madej, Henry LamJournal of Proteome Research|March 24, 2023
Modeling Lower-Order Statistics to Enable Decoy-Free FDR Estimation in ProteomicsDominik Madej, Henry LamProteomics|March 16, 2024
On the use of tandem mass spectra acquired from samples of evolutionarily distant organisms to validate methods for false discovery rate estimationDominik Madej, Henry LamJournal of Proteome Research|February 5, 2025
PyViscount: Validating False Discovery Rate Estimation Methods via Random Search Space PartitionDominik Madej, Henry LamJournal of Proteome Research|January 6, 2022
Common Decoy Distributions Simplify False Discovery Rate Estimation in Shotgun ProteomicsDominik Madej, Long Wu, Henry LamJournal of Proteomics|October 16, 2019
Proteomic analysis of thioproline misincorporation in Escherichia coliJingjing Liu, Chunlin Hao, Long Wu, et al.Journal of Proteome Research|April 19, 2025
Deep Learning-Based Prediction of Decoy Spectra for False Discovery Rate Estimation in Spectral Library SearchingChak Ming Jerry Chan, Dominik Madej, Chun Kit Jason Chung, et al.Chemical Research in Toxicology|October 26, 2020
Proteomics Study of DNA-Protein Crosslinks in Methylmethanesulfonate and Fe<sup>2+</sup>-EDTA-Exposed Human CellsYat-Hing Ham, K K Jason Chan, Dominik Madej, et al.Molecular & Cellular Proteomics : MCP|September 9, 2011
Building and searching tandem mass spectral libraries for peptide identificationHenry LamJournal of Proteome Research|October 16, 2013
Expanding tandem mass spectral libraries of phosphorylated peptides: advances and applicationsYingwei Hu, Henry LamPageof 21