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Journal of Proteome Research|June 27, 2024
A Handle on Mass Coincidence Errors in <i>De Novo</i> Sequencing of Antibodies by Bottom-up ProteomicsDouwe Schulte, Joost Snijder
Analytical Chemistry|July 14, 2022
Template-Based Assembly of Proteomic Short Reads For <i>De Novo</i> Antibody Sequencing and Repertoire ProfilingDouwe Schulte, Weiwei Peng, Joost Snijder
Elife|April 23, 2025
Simultaneous polyclonal antibody sequencing and epitope mapping by cryo electron microscopy and mass spectrometryDouwe Schulte, Marta Šiborová, Lukas Käll, et al.
Analytical Chemistry|October 14, 2025
A Universal Spectrum Annotator for Complex Peptidoforms in Mass Spectrometry-Based ProteomicsDouwe Schulte, Rien W Leuvenink, Shelley Jager, et al.
Nature Communications|March 14, 2025
In-depth plasma N-glycoproteome profiling using narrow-window data-independent acquisition on the Orbitrap Astral mass spectrometerShelley Jager, Martin Zeller, Anna Pashkova, et al.
ACS Infectious Diseases|July 22, 2025
Structural Basis for Postfusion-Specific Binding to the Respiratory Syncytial Virus F Protein by the Canonical Antigenic Site I Antibody 131-2aWeiwei Peng, Marta Šiborová, Xuesheng Wu, et al.
Analytical Chemistry|January 29, 2026
Spectral Quality-Guided Optimization of Hybrid EAciD Fragmentation on the ZenoTOF 7600 System Enables Efficient Characterization of the Serum <i>N</i>-GlycoproteomeShelley Jager, Tatiana M Shamorkina, Sibylle M Heidelberger, et al.
Life Science Alliance|March 20, 2024
Reverse-engineering the anti-MUC1 antibody 139H2 by mass spectrometry-based de novo sequencingWeiwei Peng, Koen Cap Giesbers, Marta Šiborová, et al.
Biorxiv : the Preprint Server for Biology|June 12, 2025
Deep Coverage and Extended Sequence Reads Obtained with a Single Archaeal Protease Expedite <i>de novo</i> Protein Sequencing by Mass SpectrometryTatiana M Shamorkina, Laura Pérez Pañeda, Tereza Kadavá, et al.
Cell Systems|March 12, 2026
Deep coverage and extended sequence reads obtained with a single archaeal protease expedite de novo protein sequencing by mass spectrometryLaura Pérez Pañeda, Tereza Kadavá, Tatiana M Shamorkina, et al.
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