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Computational Biology and Chemistry|October 3, 2025
EnsembleRegNet: Interpretable deep learning for transcriptional network inference from single-cell RNA-seqDuaa Mohammad Alawad, Ataur Katebi, Md Tamjidul HoqueBioinformatics Advances|April 11, 2023
AGRN: accurate gene regulatory network inference using ensemble machine learning methodsDuaa Mohammad Alawad, Ataur Katebi, Md Wasi Ul Kabir, et al.Computers in Biology and Medicine|January 31, 2024
DRBpred: A sequence-based machine learning method to effectively predict DNA- and RNA-binding residuesMd Wasi Ul Kabir, Duaa Mohammad Alawad, Pujan Pokhrel, et al.Biology|July 29, 2023
TAFPred: Torsion Angle Fluctuations Prediction from Protein SequencesMd Wasi Ul Kabir, Duaa Mohammad Alawad, Avdesh Mishra, et al.Computers in Biology and Medicine|January 20, 2025
PPILS: Protein-protein interaction prediction with language of biological codingNayan Howladar, Md Wasi Ul Kabir, Foyzul Hoque, et al.Bioinformatics (Oxford, England)|May 5, 2018
PBRpredict-Suite: a suite of models to predict peptide-recognition domain residues from protein sequenceSumaiya Iqbal, Md Tamjidul HoquePlos One|October 31, 2015
DisPredict: A Predictor of Disordered Protein Using Optimized RBF KernelSumaiya Iqbal, Md Tamjidul HoquePlos One|September 3, 2016
Estimation of Position Specific Energy as a Feature of Protein Residues from Sequence Alone for Structural ClassificationSumaiya Iqbal, Md Tamjidul HoqueJournal of Theoretical Biology|April 1, 2016
Discriminate protein decoys from native by using a scoring function based on ubiquitous Phi and Psi angles computed for all atomAvdesh Mishra, Sumaiya Iqbal, Md Tamjidul HoqueJournal of Theoretical Biology|June 21, 2015
Improved prediction of accessible surface area results in efficient energy function applicationSumaiya Iqbal, Avdesh Mishra, Md Tamjidul HoquePageof 4