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Journal of Materials Chemistry. B|March 9, 2026
Discovering naturally occurring antifreeze peptides from microbiome by integrating protein language models and molecular dynamics simulationIbrahim A Imam, Trevor Morey, Yuexu Jiang, et al.
Nucleic Acids Research|May 26, 2021
G2PDeep: a web-based deep-learning framework for quantitative phenotype prediction and discovery of genomic markersShuai Zeng, Ziting Mao, Yijie Ren, et al.
Methods in Molecular Biology (Clifton, N.J.)|July 2, 2025
Enhancing Structure-Aware Protein Language Models with Efficient Fine-Tuning for Various Protein Prediction TasksYichuan Zhang, Yongfang Qin, Mahdi Pourmirzaei, et al.
Langmuir : the ACS Journal of Surfaces and Colloids|January 15, 2025
Integrating Protein Language Model and Molecular Dynamics Simulations to Discover Antibiofouling PeptidesIbrahim A Imam, Shea Bailey, Duolin Wang, et al.
Biorxiv : the Preprint Server for Biology|August 8, 2025
ProtLoc-GRPO: Cell line-specific subcellular localization prediction using a graph-based model and reinforcement learningShuai Zeng, Weinan Zhang, Chaohan Li, et al.
Research Square|September 26, 2025
Reusability Report: Meta-Learning for Antigen-Specific T-Cell Receptor Binder IdentificationDong Xu, Fei He, Xianyu Wang
Nucleic Acids Research|January 27, 2021
DM3Loc: multi-label mRNA subcellular localization prediction and analysis based on multi-head self-attention mechanismDuolin Wang, Zhaoyue Zhang, Yuexu Jiang, et al.
Nature Reviews Bioengineering|April 5, 2024
Diffusion models in bioinformatics and computational biologyZhiye Guo, Jian Liu, Yanli Wang, et al.
Bioinformatics (Oxford, England)|October 17, 2017
MusiteDeep: a deep-learning framework for general and kinase-specific phosphorylation site predictionDuolin Wang, Shuai Zeng, Chunhui Xu, et al.
Biophysical Journal|February 6, 2026
ProtLoc-GRPO: Cell line-specific subcellular localization prediction using a graph-based model and reinforcement learningShuai Zeng, Weinan Zhang, Chaohan Li, et al.
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