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Computational and Structural Biotechnology Journal|January 22, 2025
Predicting the location of coordinated metal ion-ligand binding sites using geometry-aware graph neural networksClement Essien, Ning Wang, Yang Yu, et al.Frontiers in Genetics|August 29, 2022
Sampling and ranking spatial transcriptomics data embeddings to identify tissue architectureYu Lin, Yan Wang, Yanchun Liang, et al.Nucleic Acids Research|May 13, 2023
MULocDeep web service for protein localization prediction and visualization at subcellular and suborganellar levelsYuexu Jiang, Lei Jiang, Chopparapu Sai Akhil, et al.Computational and Structural Biotechnology Journal|September 15, 2021
MULocDeep: A deep-learning framework for protein subcellular and suborganellar localization prediction with residue-level interpretationYuexu Jiang, Duolin Wang, Yifu Yao, et al.Journal of Advanced Research|August 3, 2024
IRnet: Immunotherapy response prediction using pathway knowledge-informed graph neural networkYuexu Jiang, Manish Sridhar Immadi, Duolin Wang, et al.Biorxiv : the Preprint Server for Biology|February 14, 2024
Parameter-Efficient Fine-Tuning Enhances Adaptation of Single Cell Large Language Model for Cell Type IdentificationFei He, Ruixin Fei, Mingyue Gao, et al.BMC Systems Biology|November 23, 2018
Large-scale prediction of protein ubiquitination sites using a multimodal deep architectureFei He, Rui Wang, Jiagen Li, et al.Frontiers in Bioinformatics|October 28, 2022
Quality Assessment of Protein Docking Models Based on Graph Neural NetworkYe Han, Fei He, Yongbing Chen, et al.Briefings in Bioinformatics|August 27, 2025
MULoc-target: Targeting peptide classification and detection using a protein language modelYuexu Jiang, Duolin Wang, Shuai Zeng, et al.Advanced Science (Weinheim, Baden-Wurttemberg, Germany)|December 12, 2024
S-PLM: Structure-Aware Protein Language Model via Contrastive Learning Between Sequence and StructureDuolin Wang, Mahdi Pourmirzaei, Usman L Abbas, et al.Pageof 1,198