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Polymers|April 10, 2019
Chromatin Loop Extrusion and Chromatin UnknottingDusan Racko, Fabrizio Benedetti, Dimos Goundaroulis, et al.
Nucleic Acids Research|November 16, 2017
Transcription-induced supercoiling as the driving force of chromatin loop extrusion during formation of TADs in interphase chromosomesDusan Racko, Fabrizio Benedetti, Julien Dorier, et al.
Nucleic Acids Research|November 6, 2018
Are TADs supercoiled?Dusan Racko, Fabrizio Benedetti, Julien Dorier, et al.
The Journal of Chemical Physics|August 21, 2009
The free-volume structure of a polymer melt, poly(vinyl methylether) from molecular dynamics simulations and cavity analysisDusan Racko, Sara Capponi, Fernando Alvarez, et al.
Nucleic Acids Research|October 4, 2017
Transcription-induced supercoiling explains formation of self-interacting chromatin domains in S. pombeFabrizio Benedetti, Dusan Racko, Julien Dorier, et al.
Nucleic Acids Research|July 8, 2015
Generation of supercoils in nicked and gapped DNA drives DNA unknotting and postreplicative decatenationDusan Racko, Fabrizio Benedetti, Julien Dorier, et al.
Methods in Molecular Biology (Clifton, N.J.)|August 27, 2017
Molecular Dynamics Simulation of Supercoiled, Knotted, and Catenated DNA Molecules, Including Modeling of Action of DNA GyraseDusan Racko, Fabrizio Benedetti, Julien Dorier, et al.
Nucleic Acids Research|April 24, 2016
How topoisomerase IV can efficiently unknot and decatenate negatively supercoiled DNA molecules without causing their torsional relaxationEric J Rawdon, Julien Dorier, Dusan Racko, et al.
Nucleic Acids Research|February 6, 2015
Effects of physiological self-crowding of DNA on shape and biological properties of DNA molecules with various levels of supercoilingFabrizio Benedetti, Aleksandre Japaridze, Julien Dorier, et al.
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