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BMC Infectious Diseases|September 20, 2022
COVID's collateral damage: likelihood of measles resurgence in the United StatesMugdha Thakur, Richard Zhou, Mukundan Mohan, et al.
Epidemics|July 18, 2024
Role of heterogeneity: National scale data-driven agent-based modeling for the US COVID-19 Scenario Modeling HubJiangzhuo Chen, Parantapa Bhattacharya, Stefan Hoops, et al.
PNAS Nexus|December 25, 2024
Epihiper-A high performance computational modeling framework to support epidemic scienceJiangzhuo Chen, Stefan Hoops, Henning S Mortveit, et al.
Medrxiv : the Preprint Server for Health Sciences|November 3, 2020
From 5Vs to 6Cs: Operationalizing Epidemic Data Management with COVID-19 SurveillanceAkhil Sai Peddireddy, Dawen Xie, Pramod Patil, et al.
Medrxiv : the Preprint Server for Health Sciences|March 3, 2021
Scalable Epidemiological Workflows to Support COVID-19 Planning and ResponseDustin Machi, Parantapa Bhattacharya, Stefan Hoops, et al.
Methods in Molecular Biology (Clifton, N.J.)|December 27, 2017
Assembly, Annotation, and Comparative Genomics in PATRIC, the All Bacterial Bioinformatics Resource CenterAlice R Wattam, Thomas Brettin, James J Davis, et al.
Journal of Parallel and Distributed Computing|May 22, 2024
Novel multi-cluster workflow system to support real-time HPC-enabled epidemic science: Investigating the impact of vaccine acceptance on COVID-19 spreadParantapa Bhattacharya, Dustin Machi, Jiangzhuo Chen, et al.
Plos One|November 24, 2020
Data analysis and modeling pipelines for controlled networked social science experimentsVanessa Cedeno-Mieles, Zhihao Hu, Yihui Ren, et al.
Briefings in Bioinformatics|August 11, 2021
A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypesMargo VanOeffelen, Marcus Nguyen, Derya Aytan-Aktug, et al.
Bioinformatics (Oxford, England)|January 10, 2015
RNA-Rocket: an RNA-Seq analysis resource for infectious disease researchAndrew S Warren, Cristina Aurrecoechea, Brian Brunk, et al.
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