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The Journal of Physical Chemistry. B
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January 16, 2019
Dissociation Process of a MDM2/p53 Complex Investigated by Parallel Cascade Selection Molecular Dynamics and the Markov State Model
Duy Phuoc Tran, Akio Kitao
Journal of Chemical Theory and Computation
|
March 21, 2020
Kinetic Selection and Relaxation of the Intrinsically Disordered Region of a Protein upon Binding
Duy Phuoc Tran, Akio Kitao
ACS Omega
|
February 16, 2026
Revisiting Vacuum Simulations Using Modern Classical Protein Force Fields
Vi Toan Lam, Duy Phuoc Tran
Journal of Chemical Information and Modeling
|
October 13, 2025
Tandem Allosteric Effects of Reactant and Product that Promote Deacetylation Cycles in Sir2
Zhen Bai, Duy Phuoc Tran, Akio Kitao
The Journal of Chemical Physics
|
November 10, 2020
Erratum: "Edge expansion parallel cascade selection molecular dynamics simulation for investigating large-amplitude collective motions of proteins" [J. Chem. Phys. 152, 225101 (2020)]
Kenichiro Takaba, Duy Phuoc Tran, Akio Kitao
The Journal of Chemical Physics
|
June 15, 2020
Edge expansion parallel cascade selection molecular dynamics simulation for investigating large-amplitude collective motions of proteins
Kenichiro Takaba, Duy Phuoc Tran, Akio Kitao
Journal of Chemical Theory and Computation
|
November 29, 2017
Protein-Ligand Dissociation Simulated by Parallel Cascade Selection Molecular Dynamics
Duy Phuoc Tran, Kazuhiro Takemura, Kazuo Kuwata, et al.
Biophysics and Physicobiology
|
February 18, 2022
Binding free energy of protein/ligand complexes calculated using dissociation Parallel Cascade Selection Molecular Dynamics and Markov state model
Hiroaki Hata, Duy Phuoc Tran, Mohamed Marzouk Sobeh, et al.
The Journal of Physical Chemistry. B
|
May 11, 2018
Vibrational Energy Transfer from Heme through Atomic Contacts in Proteins
Satoshi Yamashita, Misao Mizuno, Duy Phuoc Tran, et al.
Scientific Reports
|
March 10, 2022
Inhibition of the hexamerization of SARS-CoV-2 endoribonuclease and modeling of RNA structures bound to the hexamer
Duy Phuoc Tran, Yuta Taira, Takumi Ogawa, et al.
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of 3
Search research articles
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Showing results (1-10 of 25) with videos related to
Sort By:
Page
of 3
The Journal of Physical Chemistry. B
|
January 16, 2019
Dissociation Process of a MDM2/p53 Complex Investigated by Parallel Cascade Selection Molecular Dynamics and the Markov State Model
Duy Phuoc Tran, Akio Kitao
Journal of Chemical Theory and Computation
|
March 21, 2020
Kinetic Selection and Relaxation of the Intrinsically Disordered Region of a Protein upon Binding
Duy Phuoc Tran, Akio Kitao
ACS Omega
|
February 16, 2026
Revisiting Vacuum Simulations Using Modern Classical Protein Force Fields
Vi Toan Lam, Duy Phuoc Tran
Journal of Chemical Information and Modeling
|
October 13, 2025
Tandem Allosteric Effects of Reactant and Product that Promote Deacetylation Cycles in Sir2
Zhen Bai, Duy Phuoc Tran, Akio Kitao
The Journal of Chemical Physics
|
November 10, 2020
Erratum: "Edge expansion parallel cascade selection molecular dynamics simulation for investigating large-amplitude collective motions of proteins" [J. Chem. Phys. 152, 225101 (2020)]
Kenichiro Takaba, Duy Phuoc Tran, Akio Kitao
The Journal of Chemical Physics
|
June 15, 2020
Edge expansion parallel cascade selection molecular dynamics simulation for investigating large-amplitude collective motions of proteins
Kenichiro Takaba, Duy Phuoc Tran, Akio Kitao
Journal of Chemical Theory and Computation
|
November 29, 2017
Protein-Ligand Dissociation Simulated by Parallel Cascade Selection Molecular Dynamics
Duy Phuoc Tran, Kazuhiro Takemura, Kazuo Kuwata, et al.
Biophysics and Physicobiology
|
February 18, 2022
Binding free energy of protein/ligand complexes calculated using dissociation Parallel Cascade Selection Molecular Dynamics and Markov state model
Hiroaki Hata, Duy Phuoc Tran, Mohamed Marzouk Sobeh, et al.
The Journal of Physical Chemistry. B
|
May 11, 2018
Vibrational Energy Transfer from Heme through Atomic Contacts in Proteins
Satoshi Yamashita, Misao Mizuno, Duy Phuoc Tran, et al.
Scientific Reports
|
March 10, 2022
Inhibition of the hexamerization of SARS-CoV-2 endoribonuclease and modeling of RNA structures bound to the hexamer
Duy Phuoc Tran, Yuta Taira, Takumi Ogawa, et al.
Page
of 3