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Virus Evolution|June 16, 2023
Variation within major internal repeats of KSHV in vivoJan Clement Santiago, Dylan H Westfall, Scott V Adams, et al.
Biorxiv : the Preprint Server for Biology|March 3, 2023
Optimized SMRT-UMI protocol produces highly accurate sequence datasets from diverse populations - application to HIV-1 quasispeciesDylan H Westfall, Wenjie Deng, Alec Pankow, et al.
Bioinformatics (Oxford, England)|August 1, 2013
Indel and Carryforward Correction (ICC): a new analysis approach for processing 454 pyrosequencing dataWenjie Deng, Brandon S Maust, Dylan H Westfall, et al.
Virus Evolution|May 20, 2024
Optimized SMRT-UMI protocol produces highly accurate sequence datasets from diverse populations-Application to HIV-1 quasispeciesDylan H Westfall, Wenjie Deng, Alec Pankow, et al.
Proceedings of the National Academy of Sciences of the United States of America|April 14, 2026
Recurrent mutations drive rapid HIV escape from two broadly neutralizing antibodies in vivoElena V Romero, Abigail E Clyde, Elena E Giorgi, et al.
Journal of Virology|March 8, 2013
HIV-1 conserved-element vaccines: relationship between sequence conservation and replicative capacityMorgane Rolland, Siriphan Manocheewa, J Victor Swain, et al.
Biorxiv : the Preprint Server for Biology|September 5, 2025
Distinct modes of evolution drive HIV escape from two broadly neutralizing antibodiesElena V Romero, Abigail E Clyde, Elena E Giorgi, et al.
Journal of Virology|July 31, 2015
Fitness-Balanced Escape Determines Resolution of Dynamic Founder Virus Escape Processes in HIV-1 InfectionJustine E Sunshine, Brendan B Larsen, Brandon Maust, et al.
Plos One|October 19, 2017
Patterns and rates of viral evolution in HIV-1 subtype B infected females and malesMichael J Dapp, Kord M Kober, Lennie Chen, et al.
Biorxiv : the Preprint Server for Biology|January 23, 2026
Inhibitory potential of autologous neutralizing antibodies sets quantitative limits on the rebound-competent HIV-1 reservoirMauro A Garcia, Anna Farrell-Sherman, Junlin Zhuo, et al.
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