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Nature Communications|October 14, 2025
A comprehensive benchmark of single-cell Hi-C embedding toolsDylan Plummer, Xiuyuan Lang, Shanshan Zhang, et al.
Nature Genetics|July 11, 2022
DeepLoop robustly maps chromatin interactions from sparse allele-resolved or single-cell Hi-C data at kilobase resolutionShanshan Zhang, Dylan Plummer, Leina Lu, et al.
Nature Communications|September 5, 2023
Single cell multiomic analysis reveals diabetes-associated β-cell heterogeneity driven by HNF1AChen Weng, Anniya Gu, Shanshan Zhang, et al.
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