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Journal of Biomolecular Structure & Dynamics|June 5, 2009
A docking study using atomistic conformers generated via elastic network model for cyclosporin A/cyclophilin A complexE Demet Akten, Sertan Cansu, Pemra DorukerBiochemistry|January 15, 2008
Dimerization affects collective dynamics of triosephosphate isomeraseSertan Cansu, Pemra DorukerBMC Structural Biology|July 3, 2016
Investigation of allosteric coupling in human β2-adrenergic receptor in the presence of intracellular loop 3Canan Ozgur, Pemra Doruker, E Demet AktenMolecular Informatics|July 29, 2016
Blind Dockings of Benzothiazoles to Multiple Receptor Conformations of Triosephosphate Isomerase from Trypanosoma cruzi and HumanZeynep Kurkcuoglu, Gulgun Ural, E Demet Akten, et al.Biophysical Journal|August 19, 2009
Focused functional dynamics of supramolecules by use of a mixed-resolution elastic network modelOzge Kurkcuoglu, Osman Teoman Turgut, Sertan Cansu, et al.Plos One|June 28, 2016
Ligand Docking to Intermediate and Close-To-Bound Conformers Generated by an Elastic Network Model Based Algorithm for Highly Flexible ProteinsZeynep Kurkcuoglu, Pemra DorukerPlos One|July 22, 2016
Correction: Ligand Docking to Intermediate and Close-To-Bound Conformers Generated by an Elastic Network Model Based Algorithm for Highly Flexible ProteinsZeynep Kurkcuoglu, Pemra DorukerJournal of Chemical Information and Modeling|March 27, 2019
Protein-Ligand Complexes as Constrained Dynamical SystemsBurak T Kaynak, Pemra DorukerProteins|October 1, 2003
Functional motions can be extracted from on-lattice construction of protein structuresPemra Doruker, Robert L JerniganJournal of Computational Chemistry|August 24, 2010
Effect of ligand binding on the intraminimum dynamics of proteinsBurak Alakent, Sena Baskan, Pemra DorukerPageof 6