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Briefings in Bioinformatics|January 20, 2009
Moby and Moby 2: creatures of the deep (web)Ben P Vandervalk, E Luke McCarthy, Mark D WilkinsonMicroorganisms|April 30, 2021
CaptureSeq: Hybridization-Based Enrichment of cpn60 Gene Fragments Reveals the Community Structures of Synthetic and Natural Microbial EcosystemsMatthew G Links, Tim J Dumonceaux, E Luke McCarthy, et al.Veterinary and Animal Science|March 19, 2026
Comparison of short nasal swab and deep nasopharyngeal swab sampling methods to describe BRD-associated viruses and bacteria detected using a metagenomics approach optimized for virus recovery in fall-placed beef calves shortly after feedlot arrivalEmmanuel Donbraye, Lianne McLeod, Zhijian Chai, et al.JMIR Research Protocols|April 25, 2013
The SADI Personal Health Lens: A Web Browser-Based System for Identifying Personally Relevant Drug InteractionsBen Vandervalk, E Luke McCarthy, José Cruz-Toledo, et al.Journal of Biotechnology|May 24, 2016
Enrichment and identification of biosurfactant-producing oil field microbiota utilizing electron acceptors other than oxygen and nitrateYuriy Kryachko, Diana Semler, John Vogrinetz, et al.Frontiers in Microbiology|May 23, 2024
Bacterial enrichment prior to third-generation metagenomic sequencing improves detection of BRD pathogens and genetic determinants of antimicrobial resistance in feedlot cattleEmily K Herman, Stacey R Lacoste, Claire N Freeman, et al.Bioinformatics (Oxford, England)|July 12, 2012
Gemma: a resource for the reuse, sharing and meta-analysis of expression profiling dataAnton Zoubarev, Kelsey M Hamer, Kiran D Keshav, et al.Frontiers in Veterinary Science|March 13, 2026
Diagnostic sensitivity and specificity of metagenomic sequencing and qPCR for detection of viruses associated with bovine respiratory disease estimated using Bayesian latent class modelsEmmanuel Donbraye, Lianne McLeod, Zhijian Chai, et al.Antibiotics (Basel, Switzerland)|November 27, 2025
Evaluating the Diagnostic Performance of Long-Read Metagenomic Sequencing Compared to Culture and Antimicrobial Susceptibility Testing for Detection of Bovine Respiratory Bacteria and Indicators of Antimicrobial ResistanceJennifer N Abi Younes, Lianne McLeod, Simon J G Otto, et al.Antibiotics (Basel, Switzerland)|November 27, 2025
Respiratory Bacteria and Antimicrobial Resistance Genes Detected by Long-Read Metagenomic Sequencing Following Feedlot Arrival, Subsequent Treatment Risk and Phenotypic Resistance in Feedlot CalvesJennifer N Abi Younes, Lianne McLeod, Stacey R Lacoste, et al.Pageof 2