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G3 (Bethesda, Md.)|June 5, 2024
OrthoPhyl-streamlining large-scale, orthology-based phylogenomic studies of bacteria at broad evolutionary scalesEarl A Middlebrook, Robab Katani, Jeanne M Fair
Peerj|August 18, 2025
Use ATCCfinder to identify commercially available American Type Culture Collection strains based on sequence queriesSamuel I Koehler, Earl A Middlebrook, Blake T Hovde, et al.
Frontiers in Public Health|March 18, 2021
How Cooperative Engagement Programs Strengthen Sequencing Capabilities for Biosurveillance and Outbreak ResponseAndrew W Bartlow, Earl A Middlebrook, Alicia T Romero, et al.
STAR Protocols|September 27, 2025
Protocol to detect dilution cycles in chemostat experiments and estimate growth rate slopes with linear modeling with R software chemostat_regressionSamuel I Koehler, Jennifer T Pentz, Earl A Middlebrook, et al.
Frontiers in Genetics|September 13, 2021
Deep Sequencing of MHC-Adapted Viral Lines Reveals Complex Recombinational Exchanges With Endogenous Retroviruses Leading to High-Frequency VariantsEarl A Middlebrook, Derek L Stark, Douglas H Cornwall, et al.
Zoonoses and Public Health|January 16, 2022
Identification and distribution of pathogens coinfecting with Brucella spp., Coxiella burnetii and Rift Valley fever virus in humans, livestock and wildlifeEarl A Middlebrook, Alicia T Romero, Bernard Bett, et al.
Health Security|February 26, 2024
Ongoing Cooperative Engagement Facilitates Agile Pandemic and Outbreak Response: Lessons Learned Through Cooperative Engagement Between Uganda and the United StatesAndrew W Bartlow, Earl A Middlebrook, Armand E K Dichosa, et al.
Plos Neglected Tropical Diseases|October 5, 2023
Seroprevalence of Brucella spp. and Rift Valley fever virus among slaughterhouse workers in Isiolo County, northern KenyaRichard Nyamota, Josphat Maina, James Akoko, et al.
Animal Microbiome|January 12, 2025
The Bacterial and pathogenic landscape of African buffalo (Syncerus caffer) whole blood and serum from KenyaRichard Nyamota, Earl A Middlebrook, Hussein M Abkallo, et al.
Scientific Reports|March 21, 2025
National serosurvey and risk mapping reveal widespread distribution of Coxiella burnetii in KenyaLillian Wambua, Bernard Bett, Hussein M Abkallo, et al.
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