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RNA (New York, N.Y.)|February 24, 2006
RNA secondary structure prediction from sequence alignments using a network of k-nearest neighbor classifiersEckart Bindewald, Bruce A ShapiroRNA (New York, N.Y.)|July 27, 2013
Computational detection of abundant long-range nucleotide covariation in Drosophila genomesEckart Bindewald, Bruce A ShapiroNucleic Acids Research|December 24, 2005
Structural polymorphism of the HIV-1 leader region explored by computational methodsWojciech Kasprzak, Eckart Bindewald, Bruce A ShapiroNucleic Acids Research|May 27, 2010
CyloFold: secondary structure prediction including pseudoknotsEckart Bindewald, Tanner Kluth, Bruce A ShapiroRNA Biology|June 2, 2020
Predicting RNA SHAPE scores with deep learningNoah Bliss, Eckart Bindewald, Bruce A ShapiroNucleic Acids Research|July 18, 2006
CorreLogo: an online server for 3D sequence logos of RNA and DNA alignmentsEckart Bindewald, Thomas D Schneider, Bruce A ShapiroACS Nano|November 10, 2011
Multistrand RNA secondary structure prediction and nanostructure design including pseudoknotsEckart Bindewald, Kirill Afonin, Luc Jaeger, et al.Methods in Molecular Biology (Clifton, N.J.)|November 26, 2008
Protocols for the in silico design of RNA nanostructuresBruce A Shapiro, Eckart Bindewald, Wojciech Kasprzak, et al.Current Opinion in Structural Biology|March 27, 2007
Bridging the gap in RNA structure predictionBruce A Shapiro, Yaroslava G Yingling, Wojciech Kasprzak, et al.Methods in Molecular Biology (Clifton, N.J.)|July 22, 2017
Computational Generation of RNA NanoringsRishabh Sharan, Eckart Bindewald, Wojciech K Kasprzak, et al.Pageof 12