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The Journal of Physical Chemistry. B|February 19, 2024
From Average Transient Transporter Currents to Microscopic Mechanism─A Bayesian AnalysisAugust George, Daniel M ZuckermanJournal of Chemical Theory and Computation|September 29, 2020
Accelerated Estimation of Long-Timescale Kinetics from Weighted Ensemble Simulation via Non-Markovian "Microbin" AnalysisJeremy Copperman, Daniel M ZuckermanJournal of Chemical Theory and Computation|April 20, 2019
Statistical Uncertainty Analysis for Small-Sample, High Log-Variance Data: Cautions for Bootstrapping and Bayesian BootstrappingBarmak Mostofian, Daniel M ZuckermanJournal of Chemical Theory and Computation|June 11, 2011
Heterogeneous path ensembles for conformational transitions in semi-atomistic models of adenylate kinaseDivesh Bhatt, Daniel M ZuckermanJournal of Chemical Theory and Computation|November 18, 2014
Tunable Coarse Graining for Monte Carlo Simulations of Proteins via Smoothed Energy Tables: Direct and Exchange SimulationsJustin Spiriti, Daniel M ZuckermanPlos One|March 21, 2017
Biophysical comparison of ATP-driven proton pumping mechanisms suggests a kinetic advantage for the rotary process depending on coupling ratioRamu Anandakrishnan, Daniel M ZuckermanThe Journal of Chemical Physics|December 9, 2009
Absolute free energies and equilibrium ensembles of dense fluids computed from a nondynamic growth methodDivesh Bhatt, Daniel M ZuckermanMultiscale Modeling & Simulation : a SIAM Interdisciplinary Journal|August 23, 2021
OPTIMIZING WEIGHTED ENSEMBLE SAMPLING OF STEADY STATESDavid Aristoff, Daniel M ZuckermanJournal of Chemical Theory and Computation|April 11, 2024
Bayesian Mechanistic Inference, Statistical Mechanics, and a New Era for Monte CarloDaniel M Zuckerman, August GeorgeChemistry and Physics of Lipids|September 5, 2020
Composition dependence of cholesterol flip-flop rates in physiological mixturesSwapnil Baral, Ilya Levental, Edward LymanPageof 15