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Plos One|October 3, 2018
Optimal clustering under uncertaintyLori A Dalton, Marco E Benalcázar, Edward R DoughertyEURASIP Journal on Bioinformatics & Systems Biology|June 28, 2008
Detecting periodic genes from irregularly sampled gene expressions: a comparison studyWentao Zhao, Kwadwo Agyepong, Erchin Serpedin, et al.BMC Bioinformatics|December 15, 2011
Probabilistic reconstruction of the tumor progression process in gene regulatory networks in the presence of uncertaintyMohammad Shahrokh Esfahani, Byung-Jun Yoon, Edward R DoughertyPhilosophical Transactions. Series A, Mathematical, Physical, and Engineering Sciences|October 5, 2016
Big data need big theory tooPeter V Coveney, Edward R Dougherty, Roger R HighfieldBioinformatics (Oxford, England)|October 20, 2010
State reduction for network intervention in probabilistic Boolean networksXiaoning Qian, Noushin Ghaffari, Ivan Ivanov, et al.Bioinformatics (Oxford, England)|August 16, 2014
Cross-validation under separate sampling: strong bias and how to correct itUlisses M Braga-Neto, Amin Zollanvari, Edward R DoughertyEURASIP Journal on Bioinformatics & Systems Biology|March 1, 2008
Comparison of gene regulatory networks via steady-state trajectoriesMarcel Brun, Seungchan Kim, Woonjung Choi, et al.BMC Systems Biology|June 17, 2009
Intervention in gene regulatory networks via greedy control policies based on long-run behaviorXiaoning Qian, Ivan Ivanov, Noushin Ghaffari, et al.BMC Bioinformatics|December 15, 2011
A CoD-based stationary control policy for intervening in large gene regulatory networksNoushin Ghaffari, Ivan Ivanov, Xiaoning Qian, et al.Molecular Systems Biology|September 29, 2011
A regression model approach to enable cell morphology correction in high-throughput flow cytometryTheo A Knijnenburg, Oriol Roda, Yakun Wan, et al.Pageof 32