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Cell Reports|January 19, 2022
A functional module states framework reveals transcriptional states for drug and target predictionGuangrong Qin, Theo A Knijnenburg, David L Gibbs, et al.EURASIP Journal on Bioinformatics & Systems Biology|October 11, 2012
Fastbreak: a tool for analysis and visualization of structural variations in genomic dataRyan Bressler, Jake Lin, Andrea Eakin, et al.Oncology Reports|August 4, 2005
Molecular voting for glioma classification reflecting heterogeneity in the continuum of cancer progressionGregory N Fuller, Cristian Mircean, Ioan Tabus, et al.Plos One|December 19, 2015
CloudForest: A Scalable and Efficient Random Forest Implementation for Biological DataRyan Bressler, Richard B Kreisberg, Brady Bernard, et al.Scientific Reports|November 24, 2016
Logic models to predict continuous outputs based on binary inputs with an application to personalized cancer therapyTheo A Knijnenburg, Gunnar W Klau, Francesco Iorio, et al.Journal of Hematology & Oncology|March 7, 2014
Post-transcriptional regulatory network of epithelial-to-mesenchymal and mesenchymal-to-epithelial transitionsFei Guo, Brittany C Parker Kerrigan, Da Yang, et al.IEEE Transactions on Bio-Medical Engineering|December 22, 2010
Intervention in biological phenomena modeled by S-systemsNader Meskin, Hazem N Nounou, Mohamed Nounou, et al.IEEE Transactions on Bio-Medical Engineering|October 8, 2008
Intervention in gene regulatory networks via a stationary mean-first-passage-time control policyGolnaz Vahedi, Babak Faryabi, Jean-Francois Chamberland, et al.Journal of Theoretical Biology|September 1, 2009
Sampling-rate-dependent probabilistic Boolean networksGolnaz Vahedi, Babak Faryabi, Jean-Francois Chamberland, et al.BMC Genomics|June 14, 2019
Scalable optimal Bayesian classification of single-cell trajectories under regulatory model uncertaintyEhsan Hajiramezanali, Mahdi Imani, Ulisses Braga-Neto, et al.Pageof 32