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Bioinformatics (Oxford, England)|December 19, 2018
lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing DataEhsan Haghshenas, S Cenk Sahinalp, Faraz Hach
Bioinformatics (Oxford, England)|September 3, 2016
CoLoRMap: Correcting Long Reads by Mapping short readsEhsan Haghshenas, Faraz Hach, S Cenk Sahinalp, et al.
Bioinformatics (Oxford, England)|October 11, 2012
SCALCE: boosting sequence compression algorithms using locally consistent encodingFaraz Hach, Ibrahim Numanagic, Can Alkan, et al.
Iscience|February 29, 2020
Genotyping and Copy Number Analysis of Immunoglobin Heavy Chain Variable Genes Using Long ReadsMichael Ford, Ehsan Haghshenas, Corey T Watson, et al.
Iscience|September 8, 2020
Erratum: Genotyping and Copy Number Analysis of Immunoglobulin Heavy Chain Variable Genes Using Long ReadsMichael Ford, Ehsan Haghshenas, Corey T Watson, et al.
Genome Research|October 20, 2019
PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing dataSalem Malikic, Farid Rashidi Mehrabadi, Simone Ciccolella, et al.
Bioinformatics (Oxford, England)|May 19, 2011
Sensitive and fast mapping of di-base encoded readsFarhad Hormozdiari, Faraz Hach, S Cenk Sahinalp, et al.
Iscience|August 12, 2020
HASLR: Fast Hybrid Assembly of Long ReadsEhsan Haghshenas, Hossein Asghari, Jens Stoye, et al.
Bioinformatics (Oxford, England)|June 13, 2012
Dissect: detection and characterization of novel structural alterations in transcribed sequencesDeniz Yorukoglu, Faraz Hach, Lucas Swanson, et al.
Nucleic Acids Research|May 10, 2014
mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applicationsFaraz Hach, Iman Sarrafi, Farhad Hormozdiari, et al.
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