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Plos One|November 12, 2015
Continuous Distributed Representation of Biological Sequences for Deep Proteomics and GenomicsEhsaneddin Asgari, Mohammad R K MofradScientific Reports|March 7, 2019
Probabilistic variable-length segmentation of protein sequences for discriminative motif discovery (DiMotif) and sequence embedding (ProtVecX)Ehsaneddin Asgari, Alice C McHardy, Mohammad R K MofradBioinformatics (Oxford, England)|June 29, 2018
MicroPheno: predicting environments and host phenotypes from 16S rRNA gene sequencing using a k-mer based representation of shallow sub-samplesEhsaneddin Asgari, Kiavash Garakani, Alice C McHardy, et al.Bioinformatics (Oxford, England)|February 14, 2023
GO Bench: shared hub for universal benchmarking of machine learning-based protein functional annotationsAndrew Dickson, Ehsaneddin Asgari, Alice C McHardy, et al.IEEE/ACM Transactions on Computational Biology and Bioinformatics|August 30, 2021
TripletProt: Deep Representation Learning of Proteins Based On Siamese NetworksEsmaeil Nourani, Ehsaneddin Asgari, Alice C McHardy, et al.Bioinformatics (Oxford, England)|June 28, 2021
EpitopeVec: linear epitope prediction using deep protein sequence embeddingsAkash Bahai, Ehsaneddin Asgari, Mohammad R K Mofrad, et al.Bioinformatics (Oxford, England)|December 1, 2018
DiTaxa: nucleotide-pair encoding of 16S rRNA for host phenotype and biomarker detectionEhsaneddin Asgari, Philipp C Münch, Till R Lesker, et al.Biophysical Journal|March 15, 2018
Molecular Insights into the Mechanisms of SUN1 Oligomerization in the Nuclear EnvelopeZeinab Jahed, Darya Fadavi, Uyen T Vu, et al.Plos Computational Biology|April 7, 2025
Role of pore dilation in molecular transport through the nuclear pore complex: Insights from polymer scaling theoryAtsushi Matsuda, Mohammad R K MofradPlos One|November 28, 2013
Higher nucleoporin-Importinβ affinity at the nuclear basket increases nucleocytoplasmic importMohammad Azimi, Mohammad R K MofradPageof 16