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RNA (New York, N.Y.)|September 6, 2008
ShapeFinder: a software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresisSuzy M Vasa, Nicolas Guex, Kevin A Wilkinson, et al.Nature Protocols|October 2, 2015
Selective 2'-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysisMatthew J Smola, Greggory M Rice, Steven Busan, et al.Nature Communications|January 21, 2025
Scaffold-enabled high-resolution cryo-EM structure determination of RNADaniel B Haack, Boris Rudolfs, Shouhong Jin, et al.Journal of the American Chemical Society|December 1, 2011
Femtomole SHAPE reveals regulatory structures in the authentic XMRV RNA genomeJacob K Grohman, Sumith Kottegoda, Robert J Gorelick, et al.Journal of the American Chemical Society|February 6, 2009
Native-like RNA tertiary structures using a sequence-encoded cleavage agent and refinement by discrete molecular dynamicsCostin M Gherghe, Christopher W Leonard, Feng Ding, et al.Biochemistry|December 13, 2006
Compartmentalization directs assembly of the signal recognition particleTuhin Subhra Maity, Christopher W Leonard, Marsha A Rose, et al.Journal of the American Chemical Society|June 19, 2008
Slow conformational dynamics at C2'-endo nucleotides in RNACostin M Gherghe, Stefanie A Mortimer, Joseph M Krahn, et al.Proceedings of the National Academy of Sciences of the United States of America|November 21, 2019
RNA base-pairing complexity in living cells visualized by correlated chemical probingAnthony M Mustoe, Nicole N Lama, Patrick S Irving, et al.Plos Computational Biology|May 21, 2015
Model-Free RNA Sequence and Structure Alignment Informed by SHAPE Probing Reveals a Conserved Alternate Secondary Structure for 16S rRNAChristopher A Lavender, Ronny Lorenz, Ge Zhang, et al.Nature Methods|July 17, 2014
RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP)Nathan A Siegfried, Steven Busan, Greggory M Rice, et al.Pageof 17