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Journal of Plant Physiology|July 1, 2023
Response to Tcherkez and Farquhar: Rubisco adaptation is more limited by phylogenetic constraint than by catalytic trade-offJacques W Bouvier, Steven KellyGenome Biology|August 2, 2018
Selection-driven cost-efficiency optimization of transcripts modulates gene evolutionary rate in bacteriaEmily A Seward, Steven KellyGenome Biology|March 29, 2022
SHOOT: phylogenetic gene search and ortholog inferenceDavid Mark Emms, Steven KellyBMC Genomics|April 29, 2018
OMGene: mutual improvement of gene models through optimisation of evolutionary conservationMichael P Dunne, Steven KellyMolecular Biology and Evolution|October 14, 2017
STRIDE: Species Tree Root Inference from Gene Duplication EventsDavid M Emms, Steven KellyGenome Biology|August 6, 2015
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracyDavid M Emms, Steven KellyPlos One|April 5, 2013
DendroBLAST: approximate phylogenetic trees in the absence of multiple sequence alignmentsSteven Kelly, Philip K MainiBMC Bioinformatics|June 1, 2012
MergeAlign: improving multiple sequence alignment performance by dynamic reconstruction of consensus multiple sequence alignmentsPeter W Collingridge, Steven KellyPlant Physiology|December 22, 2019
Subdivision of Light Signaling Networks Contributes to Partitioning of C<sub>4</sub> PhotosynthesisRoss-W Hendron, Steven KellyCritical Reviews in Biotechnology|October 6, 2016
Engineering biosynthesis of high-value compounds in photosynthetic organismsEllis C O'Neill, Steven KellyPageof 13