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Bioinformatics (Oxford, England)|July 1, 2021
JBrowseR: an R interface to the JBrowse 2 genome browserElliot A Hershberg, Garrett Stevens, Colin Diesh, et al.Nucleic Acids Research|April 22, 2020
OligoMinerApp: a web-server application for the design of genome-scale oligonucleotide in situ hybridization probes through the flexible OligoMiner environmentMarco Passaro, Martina Martinovic, Valeria Bevilacqua, et al.Cancer Prevention Research (Philadelphia, Pa.)|May 19, 2019
The Effect of Mouse Strain, Sex, and Carcinogen Dose on Toxicity and the Development of Lung Dysplasia and Squamous Cell Carcinomas in MiceLaura Riolobos, Ekram A Gad, Piper M Treuting, et al.Nature Methods|July 6, 2021
PaintSHOP enables the interactive design of transcriptome- and genome-scale oligonucleotide FISH experimentsElliot A Hershberg, Conor K Camplisson, Jennie L Close, et al.Bioinformatics (Oxford, England)|January 17, 2023
JBrowse Jupyter: a Python interface to JBrowse 2Teresa De Jesus Martinez, Elliot A Hershberg, Emma Guo, et al.Proceedings of the National Academy of Sciences of the United States of America|January 20, 2023
Cohesin controls X chromosome structure remodeling and X-reactivation during mouse iPSC-reprogrammingSerena F Generoso, Maria Victoria Neguembor, Elliot A Hershberg, et al.Nature Methods|October 29, 2024
Multiomic characterization of RNA microenvironments by oligonucleotide-mediated proximity-interactome mappingAshley F Tsue, Evan E Kania, Diana Q Lei, et al.Nature Methods|July 29, 2020
3D mapping and accelerated super-resolution imaging of the human genome using in situ sequencingHuy Q Nguyen, Shyamtanu Chattoraj, David Castillo, et al.Genome Biology|April 18, 2023
JBrowse 2: a modular genome browser with views of synteny and structural variationColin Diesh, Garrett J Stevens, Peter Xie, et al.Pageof 1