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Physical Chemistry Chemical Physics : PCCP|September 5, 2015
A polarizable coarse-grained protein model for dissipative particle dynamicsEmanuel K Peter, Kirill Lykov, Igor V PivkinThe Journal of Chemical Physics|November 3, 2014
A polarizable coarse-grained water model for dissipative particle dynamicsEmanuel K Peter, Igor V PivkinPlos Computational Biology|August 29, 2015
Inflow/Outflow Boundary Conditions for Particle-Based Blood Flow Simulations: Application to Arterial Bifurcations and TreesKirill Lykov, Xuejin Li, Huan Lei, et al.Plos Computational Biology|September 19, 2017
Probing eukaryotic cell mechanics via mesoscopic simulationsKirill Lykov, Yasaman Nematbakhsh, Menglin Shang, et al.The Journal of Chemical Physics|August 1, 2016
A canonical replica exchange molecular dynamics implementation with normal pressure in each replicaEmanuel K Peter, Igor V Pivkin, Joan-Emma SheaThe Journal of Chemical Physics|April 17, 2015
A kMC-MD method with generalized move-sets for the simulation of folding of α-helical and β-stranded peptidesEmanuel K Peter, Igor V Pivkin, Joan-Emma SheaPhysical Chemistry Chemical Physics : PCCP|April 26, 2016
Coarse kMC-based replica exchange algorithms for the accelerated simulation of protein folding in explicit solventEmanuel K Peter, Joan-Emma Shea, Igor V PivkinThe Journal of Chemical Physics|December 16, 2014
How water layers on graphene affect folding and adsorption of TrpZip2Emanuel K Peter, Mrigya Agarwal, BongKeun Kim, et al.The Journal of Chemical Physics|May 20, 2006
Coarse-graining limits in open and wall-bounded dissipative particle dynamics systemsIgor V Pivkin, George E KarniadakisPhysical Review Letters|October 15, 2008
Accurate coarse-grained modeling of red blood cellsIgor V Pivkin, George Em KarniadakisPageof 4