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Nature Microbiology|December 5, 2018
Genome-wide discovery of epistatic loci affecting antibiotic resistance in Neisseria gonorrhoeae using evolutionary couplingsBenjamin Schubert, Rohan Maddamsetti, Jackson Nyman, et al.Bioinformatics (Oxford, England)|August 22, 2014
OptiType: precision HLA typing from next-generation sequencing dataAndrás Szolek, Benjamin Schubert, Christopher Mohr, et al.Cell Genomics|July 8, 2025
Benchmarking of T cell receptor-epitope predictors with ePytope-TCRFelix Drost, Anna Chernysheva, Mahmoud Albahah, et al.Iscience|June 17, 2026
Integrating complementary approaches reveals antigen-reactive CD4+ T cell states after SARS-CoV-2 vaccinationKatharina Kocher, Felix Drost, Christine Schülein, et al.BMC Bioinformatics|May 10, 2017
ImmunoNodes - graphical development of complex immunoinformatics workflowsBenjamin Schubert, Luis de la Garza, Christopher Mohr, et al.American Journal of Physiology. Lung Cellular and Molecular Physiology|June 9, 2026
A Biomimetic Miniaturized In Vitro Model to Target Early Markers of Neonatal Pulmonary Vascular InjuryMotaharehsadat Heydarian, Ali Doryab, Juan Henao, et al.Plos Computational Biology|March 3, 2018
Population-specific design of de-immunized protein biotherapeuticsBenjamin Schubert, Charlotta Schärfe, Pierre Dönnes, et al.Journal of Immunological Methods|September 19, 2012
miHA-Match: computational detection of tissue-specific minor histocompatibility antigensMagdalena Feldhahn, Pierre Dönnes, Benjamin Schubert, et al.Bioinformatics (Oxford, England)|May 7, 2016
FRED 2: an immunoinformatics framework for PythonBenjamin Schubert, Mathias Walzer, Hans-Philipp Brachvogel, et al.Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference|December 12, 2023
Colorimetric Sensor Reading and Illumination Correction via Multi-Task Deep-LearningAlejandra Castelblanco, Giusy Matzeu, Elisabetta Ruggeri, et al.Pageof 5