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Plos Computational Biology|March 29, 2014
HapTree: a novel Bayesian framework for single individual polyplotyping using NGS dataEmily Berger, Deniz Yorukoglu, Jian Peng, et al.Research in Computational Molecular Biology : ... Annual International Conference, RECOMB ... : Proceedings. RECOMB (Conference : 2005- )|August 22, 2017
Traversing the <i>k</i>-mer Landscape of NGS Read Datasets for Quality Score SparsificationY William Yu, Deniz Yorukoglu, Bonnie BergerNature Communications|September 17, 2020
Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasetsEmily Berger, Deniz Yorukoglu, Lillian Zhang, et al.Bioinformatics (Oxford, England)|September 3, 2016
Fast genotyping of known SNPs through approximate k-mer matchingAriya Shajii, Deniz Yorukoglu, Yun William Yu, et al.Genome Biology|July 3, 2019
Emerging technologies towards enhancing privacy in genomic data sharingBonnie Berger, Hyunghoon ChoBioinformatics (Oxford, England)|July 14, 2020
Hopper: a mathematically optimal algorithm for sketching biological dataBenjamin DeMeo, Bonnie BergerProceedings. IEEE Symposium on Security and Privacy. Workshops|December 5, 2017
One Size Doesn't Fit All: Measuring Individual Privacy in Aggregate Genomic DataSean Simmons, Bonnie Berger... International Conference on Learning Representations|March 2, 2026
Learning protein sequence embeddings using information from structureTristan Bepler, Bonnie BergerBioinformatics (Oxford, England)|January 16, 2016
Realizing privacy preserving genome-wide association studiesSean Simmons, Bonnie BergerJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|December 30, 2015
Efficient Design of Compact Unstructured RNA Libraries Covering All k-mersYaron Orenstein, Bonnie BergerPageof 29